Browse Element(s) Details


Os.10628.1.S1_at

Description gb:AK106464.1
DB_XREF= gi:32991673
TID=Os.10628.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29984 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H01, full insert sequence.
FL= gb:AK106464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0373010/11SWIB/MDM2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10628.1.S1_at--406--7091Chr02:1565110..1565134 (25 bp)
GTCAAGCTCATCTGGAACCACATCA
LOC_Os02g03730
Os.10628.1.S1_at--615--8711Chr02:1563809..1563833 (25 bp)
TGTCCCCTCATTTCATTAAAGCTAA
LOC_Os02g03730
Os.10628.1.S1_at--314--7891Chr02:1563697..1563721 (25 bp)
GGTTCCACTAGGTTTTAGGTCATGT
LOC_Os02g03730
Os.10628.1.S1_at--920--7671Chr02:1563629..1563653 (25 bp)
GGGTTCCCAGTGATGCATGTAAAAA
LOC_Os02g03730
Os.10628.1.S1_at--405--2311Chr02:1563602..1563626 (25 bp)
AAAGGCACTCCCAATATTTTATTGC
LOC_Os02g03730
Os.10628.1.S1_at--838--10351Chr02:1563585..1563609 (25 bp)
TTTATTGCGTCCTACTACTGTGATC
LOC_Os02g03730
Os.10628.1.S1_at--1088--6371Chr02:1563564..1563588 (25 bp)
GATCCCAGGCGTTTTATGTGGTTCA
LOC_Os02g03730
Os.10628.1.S1_at--1146--8271Chr02:1563522..1563546 (25 bp)
GGCATCTTGTACCAGGCATATACTA
LOC_Os02g03730
Os.10628.1.S1_at--883--8571Chr02:1563471..1563495 (25 bp)
TGGTTGAGGCGCTCTTGTGTTCATT
LOC_Os02g03730
Os.10628.1.S1_at--991--7411Chr02:1563455..1563479 (25 bp)
GTGTTCATTGATCAGGCATGTTAAT
LOC_Os02g03730
Os.10628.1.S1_at--1137--2071Chr02:1563426..1563450 (25 bp)
ACATTCGTGGTATTGCTTTCTTCAG
NONE
Target Sequence 
GTCAAGCTCATCTGGAACCACATCAAGGCCAACGGCCTCCAGAACCCAGCAAACAAAAGGGAGATTAACTGTGACGATAA
GCTTAAAAGCTTNATTCGCCGGGAAGGACAAGGTCGGGATGATGGAGATTGCCAAGCTGCTGTCCCCTCATTTCATTAAA
GCTAACTAAACCAGTCATATGGAGCAAGTATTAGTGCTTACTGCTCGGACTTGTGTTGGGATGCTTCTTTTGTGATCCAT
GTTAGGCCCCAAGGTTCCACTAGGTTTTAGGTCATGTGGCTGTGTTAAGACTTAAAAGACTTCGTTGAACATCTAGGCCG
GGGTTCCCAGTGATGCATGTAAAAAAAAAAGGCACTCCCAATATTTTATTGCGTCCTACTACTGTGATCCCAGGCGTTTT
ATGTGGTTCAATTTTTAATCTGCCATTGGCATCTTGTACCAGGCATATACTACATATATGTATGTATGCATGCTGGTTTG
GTTGAGGCGCTCTTGTGTTCATTGATCAGGCATGTTAATTGTCACATTCGTGGTATTGCTTTCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis