Browse Element(s) Details


Os.54804.1.S1_at

Description gb:AK106802.1
DB_XREF= gi:32992011
TID=Os.54804.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B12, full insert sequence.
FL= gb:AK106802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0375011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54804.1.S1_at--399--1631Chr02:1570667..1570691 (25 bp)
AGCGGCGTGGTGTTCCGGAACATCA
LOC_Os02g03750
Os.54804.1.S1_at--129--9451Chr02:1570582..1570606 (25 bp)
TCGGCATCGTGCTCAGCGACATCGA
LOC_Os02g03750
Os.54804.1.S1_at--216--1391Chr02:1570525..1570549 (25 bp)
AGACCGTCTGCAACTGCGCCATGGG
LOC_Os02g03750
Os.54804.1.S1_at--150--6151Chr02:1570394..1570418 (25 bp)
GAGGTCCGGCATACCGAGCTGTGAA
LOC_Os02g03750
Os.54804.1.S1_at--282--9971Chr02:1570383..1570407 (25 bp)
TACCGAGCTGTGAACTGAACTGAAC
LOC_Os02g03750
Os.54804.1.S1_at--874--3851Chr02:1570364..1570388 (25 bp)
CTGAACTCTCATGCGTGAATGCTAA
LOC_Os02g03750
Os.54804.1.S1_at--329--2791Chr02:1570341..1570365 (25 bp)
AAGATCGATCGGCTTAAGCTCAATG
LOC_Os02g03750
Os.54804.1.S1_at--202--2691Chr02:1570326..1570350 (25 bp)
AAGCTCAATGAAGCCCTTTTGACCC
LOC_Os02g03750
Os.54804.1.S1_at--439--4551Chr02:1570314..1570338 (25 bp)
GCCCTTTTGACCCTGCTATTAATTA
LOC_Os02g03750
Os.54804.1.S1_at--19--3031Chr02:1570257..1570281 (25 bp)
AATCCTACTGGTGCTTTCCTTTTTG
LOC_Os02g03750
Os.54804.1.S1_at--227--4891Chr02:1570245..1570269 (25 bp)
GCTTTCCTTTTTGTTACAGTGTGCT
LOC_Os02g03750
Target Sequence 
AGCGGCGTGGTGTTCCGGAACATCACCGGGACGGCGAGGCGCGCGGAGGCGATCAGGCTGGCGTGCAGCGACGCCGTGCC
TTGCGTCGGCATCGTGCTCAGCGACATCGACCTGCGCCGCGAGGACGGCGGCGGCGAGGTGCAGACCGTCTGCAACTGCG
CCATGGGCTTCGACGACGGCCGCGTCAGCCCCGCCGCCGACTGCCTCAGGACCAGCCCCTGCGGCGGCATGTCGCCGGAC
GACTACCACCCCGACGACAAAGACGACGACGACGAGGTCCGGCATACCGAGCTGTGAACTGAACTGAACTCTCATGCGTG
AATGCTAAGATCGATCGGCTTAAGCTCAATGAAGCCCTTTTGACCCTGCTATTAATTACAGTAGTAGTAATTAATTAATT
ATAATTAATTAATCCTACTGGTGCTTTCCTTTTTGTTACAGTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis