Browse Element(s) Details


Os.28399.1.S1_at

Description gb:AK063802.1
DB_XREF= gi:32973820
TID=Os.28399.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F10, full insert sequence.
FL= gb:AK065610.1 gb:AK063802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0370011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28399.1.S1_at--1048--9371Chr02:1553259..1553283 (25 bp)
TCGAGAGAGACACCGCGCGTCTCGT
LOC_Os02g03700
Os.28399.1.S1_at--565--9351Chr02:1553206..1553230 (25 bp)
TCGCTTGGTGCAGATCGGGACCCGC
LOC_Os02g03700
Os.28399.1.S1_at--607--7971Chr02:1553162..1553186 (25 bp)
GGATCCCGCCTTGCACCAAGTGAAT
LOC_Os02g03700
Os.28399.1.S1_at--923--5071Chr02:1553150..1553174 (25 bp)
GCACCAAGTGAATCGGAGCCGGCGT
LOC_Os02g03700
Os.28399.1.S1_at--948--4571Chr02:1553091..1553115 (25 bp)
GCGCTGCTTGGTTGTTTTTATTGTC
LOC_Os02g03700
Os.28399.1.S1_at--297--10231Chr02:1553073..1553097 (25 bp)
TATTGTCTCTCCTTCGTTTCTGGGT
LOC_Os02g03700
Os.28399.1.S1_at--406--532Chr02:22855158..22855177 (20 bp)
ATCGAATTGCTGATCCTCCTCGTGT
NONE
Os.28399.1.S1_at--852--7551Chr02:1552975..1552999 (25 bp)
GGGCGTACGCGTTTGTATTAGATTT
LOC_Os02g03700
Os.28399.1.S1_at--1019--6411Chr02:1552937..1552961 (25 bp)
GATCTAGATCTGGTGCCTAATTCTC
LOC_Os02g03700
Os.28399.1.S1_at--610--7771Chr02:1552926..1552950 (25 bp)
GGTGCCTAATTCTCGATTACTTATT
LOC_Os02g03700
Os.28399.1.S1_at--541--10571Chr02:1552903..1552927 (25 bp)
TTCTATCTATGATTCGTGTCGGCGT
LOC_Os02g03700
Target Sequence 
TCGAGAGAGACACCGCGCGTCTCGTCTCGTCTCATGGCGCCGCCGCCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCG
CCGCCGCTGCCGGGGCCGGATCCCGCCTTGCACCAAGTGAATCGGAGCCGGCGTAGCGCCCTCCTTCCGCCGATCCGCCG
CCGATGCTGCGCTGCTTGGTTGTTTTTATTGTCTCTCCTTCGTTTCTGGGTCGGTATCGGGACGGGGTTAGCGATGAATC
GGATCGAATTGCTGATCCTCCTCGTGTTCGTGTTCGTAGGTGTGGGGCGTACGCGTTTGTATTAGATTTAATTTTTTTTT
CAGATCTAGATCTGGTGCCTAATTCTCGATTACTTATTCTATCTATGATTCGTGTCGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis