Browse Element(s) Details


Os.14493.1.S1_at

Description gb:AK065700.1
DB_XREF= gi:32975718
TID=Os.14493.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013035J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035J04, full insert sequence.
FL= gb:AK065700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03640Os.44418.2.S1_at11/112+1507314..1511605hypothetical protein
LOC_Os02g03640Os.44418.1.S1_at2/112+1507314..1511605hypothetical protein
LOC_Os02g03650OsAffx.24085.1.S1_at10/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.31040.1.S1_at5/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.26303.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.4302.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14493.1.S1_at--910--7471Chr02:1533575..1533787 (25 bp)
GTGGGTTGCTAGTGACTTTCCTCAA
LOC_Os02g03670
Os.14493.1.S1_at--98--5411Chr02:1533543..1533567 (25 bp)
GAAGCTGCGCTGATGATGTTTGAAA
LOC_Os02g03670
Os.14493.1.S1_at--798--211Chr02:1533486..1533510 (25 bp)
ATTTGTGTTGGTTCATTTCCTTGAC
LOC_Os02g03670
Os.14493.1.S1_at--620--10731Chr02:1533466..1533490 (25 bp)
TTGACCAATCAAAGACTACCCTCCT
LOC_Os02g03670
Os.14493.1.S1_at--72--10391Chr02:1533441..1533465 (25 bp)
TTCTTCTACCCAAAGCTAGCGGAAC
LOC_Os02g03670
Os.14493.1.S1_at--26--9651Chr02:1532748..1532771 (24 bp)
TCAGGTGTTATCCTGGGCCTTGGAA
LOC_Os02g03670
Os.14493.1.S1_at--161--291Chr02:1532710..1532734 (25 bp)
ATAGGTGGCAGTTTCTTCTGCTTGC
LOC_Os02g03670
Os.14493.1.S1_at--343--1951Chr02:1532663..1532687 (25 bp)
ACTGAAGGAAGTGGCCCTCGACATC
LOC_Os02g03670
Os.14493.1.S1_at--37--2111Chr02:1532558..1532582 (25 bp)
ACAGGTTATTTCTCCCTATATGTTG
LOC_Os02g03670
Os.14493.1.S1_at--94--271Chr02:1532541..1532565 (25 bp)
ATATGTTGATGGACTTTCGTTGTAC
LOC_Os02g03670
Os.14493.1.S1_at--916--5451Chr02:1532502..1532526 (25 bp)
GAACGGATGTATTGCTCTGATGTGT
LOC_Os02g03670
Target Sequence 
GTGGGTTGCTAGTGACTTTCCTCAACAAAAGAGAAGCTGCGCTGATGATGTTTGAAAATAGTATGCTTGTGAAATTCTAG
TTAGCTATCATTTGTGTTGGTTCATTTCCTTGACCAATCAAAGACTACCCTCCTTTCTTCTACCCAAAGCTAGCGGAACT
TTCCAAAACATTTCTTCCAAAGCTGGAGACAGTTTATTATATTCACAATTTTAAGGGACTCAAAGGAGGAACACTTTTCA
GGTGTTATCCTGGGCCTTGGAAGGTTCTGAGAAACATAGGTGGCAGTTTCTTCTGCTTGCATGAACAAGAAGAGATGCCA
TCACTGAAGGAAGTGGCCCTCGACATCCTTCCTTCTGCCTAGAACTTTTCATGAGTCATTCCAAGCATAAGCCAAGAAAA
TGGAGAAGGGAAAAAGCCTAAAAGACTACAGGTTATTTCTCCCTATATGTTGATGGACTTTCGTTGTACATAAGGAGAGC
TAGGAACGGATGTATTGCTCTGATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis