Browse Element(s) Details


OsAffx.4302.1.S1_at

Description tigr:9633.m01010
TID=OsAffx.4302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g114604/11hypothetical protein
LOC_Os02g036501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11428Os.52834.1.S1_at8/115+6447454..6455768expressed protein
LOC_Os05g11428Os.55138.1.S1_x_at1/115+6447454..6455768expressed protein
LOC_Os05g11428OsAffx.13191.1.A1_at1/115+6447454..6455768expressed protein
LOC_Os05g11428Os.15238.1.S1_at1/115+6447454..6455768expressed protein
LOC_Os05g11442NANA5+6457140..6457629NA
LOC_Os05g11460OsAffx.4302.1.S1_at4/115+6463368..6465542hypothetical protein
LOC_Os05g11470OsAffx.4303.1.S1_at11/115+6469205..6470299hypothetical protein
LOC_Os05g11479NANA5+6471649..6473302NA
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4302.1.S1_at--803--9171Chr05:6466638..6466662 (25 bp)
TGCCTACAGCCTACTGTTCCGAATG
NONE
OsAffx.4302.1.S1_at--8--9931Chr05:6466627..6466651 (25 bp)
TACTGTTCCGAATGCCGATGGCCGT
NONE
OsAffx.4302.1.S1_at--1083--7211NONE
GTCGACCCGAGGTATCAGACCTTGG
NONE
OsAffx.4302.1.S1_at--489--68915Chr12:21212454..21212478 (25 bp)
GTATCAGACCTTGGTACCTGGGTAC
NONE
OsAffx.4302.1.S1_at--898--3893Chr12:21212650..21212669 (20 bp)
CTGGGTACCAGGCATGATACTTGTG
NONE
OsAffx.4302.1.S1_at--522--7493Chr12:21212625..21212645 (21 bp)
GTGGGTATCAGCCATGATTCCTCAA
NONE
OsAffx.4302.1.S1_at--885--3211Chr05:6465910..6465934 (25 bp)
CAAGGTAGTGAGGTCCGGCTAAAAG
NONE
OsAffx.4302.1.S1_at--1092--5491Chr05:6465504..6465528 (25 bp)
GAACAACTCCTCCAAATTCCGTTCG
LOC_Os05g11460
OsAffx.4302.1.S1_at--266--2251Chr05:6465491..6465515 (25 bp)
AAATTCCGTTCGAAGCAAGCTACTA
LOC_Os05g11460
OsAffx.4302.1.S1_at--1151--5371Chr05:6465480..6465504 (25 bp)
GAAGCAAGCTACTATTAAACCCAAA
LOC_Os05g11460
OsAffx.4302.1.S1_at--1097--1291Chr05:6465388..6465412 (25 bp)
AGAGGATGGTCATACCTACACTCAC
LOC_Os05g11460
Target Sequence 
TGCCTACAGCCTACTGTTCCGAATGCCGATGGCCGTCGACCCGAGGTATCAGACCTTGGTACCTGGGTACCAGGCATGAT
ACTTGTGGGTATCAGCCATGATTCCTCAAGATACCCCCAAGGTAGTGAGGTCCGGCTAAAAGCCGGCCGCGACCATCTCC
AGGAACACGCGCTGCAGCAACTTCATCTTGAAGTTGGCGGCGAAGGAGACGAGATGAGCCATTGGGGCGGGCCTAATGGG
GGGGGCATGGAGCCTCAGCTGAACAACTCCTCCAAATTCCGTTCGAAGCAAGCTACTATTAAACCCAAAAGAGAAGCTTT
CAGATCTACCAGAGAAGTTGAGTTTGAGGCAAAGAAAAAAATGGGAACGATGAGAAAGAGGATGGTCATACCTACACTCA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis