Browse Element(s) Details


Os.52834.1.S1_at

Description gb:AK069504.1
DB_XREF= gi:32979528
TID=Os.52834.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019E20, full insert sequence.
FL= gb:AK069504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g114288/11expressed protein
LOC_Os01g507601/11Farnesyl pyrophosphate synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11400OsAffx.11264.1.S1_s_at3/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11400OsAffx.20408.1.S1_at1/115+6420038..6424007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g11414Os.48040.1.A1_at11/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.14637.1.S1_at11/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.4301.1.S1_at8/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11414OsAffx.4301.2.S1_at2/115+6426199..6437413Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os05g11428Os.52834.1.S1_at8/115+6447454..6455768expressed protein
LOC_Os05g11428Os.55138.1.S1_x_at1/115+6447454..6455768expressed protein
LOC_Os05g11428OsAffx.13191.1.A1_at1/115+6447454..6455768expressed protein
LOC_Os05g11428Os.15238.1.S1_at1/115+6447454..6455768expressed protein
LOC_Os05g11442NANA5+6457140..6457629NA
LOC_Os05g11460OsAffx.4302.1.S1_at4/115+6463368..6465542hypothetical protein
LOC_Os05g11470OsAffx.4303.1.S1_at11/115+6469205..6470299hypothetical protein
LOC_Os05g11479NANA5+6471649..6473302NA

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Gene Ontology Classification
GO idTypeName
GO:0045337biological_processfarnesyl diphosphate biosynthesis
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004337molecular_functiongeranyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52834.1.S1_at--398--2311Chr05:6447927..6447951 (25 bp)
AAAGGTCTAATTTGTAGCCCATCAG
LOC_Os05g11428
Os.52834.1.S1_at--58--1671Chr05:6447912..6447936 (25 bp)
AGCCCATCAGATGAATCATTCGGAT
LOC_Os05g11428
Os.52834.1.S1_at--671--10791Chr05:6447881..6447905 (25 bp)
TTGTCCCAATCAATGGTTATGGCTC
LOC_Os05g11428
Os.52834.1.S1_at--110--7891Chr05:6447867..6447891 (25 bp)
GGTTATGGCTCAAACTTTTCTCAAG
LOC_Os05g11428
Os.52834.1.S1_at--227--3471Chr05:6447834..6447858 (25 bp)
CAGTGTGCAGCTAGTTCTGGTCTTC
LOC_Os05g11428
Os.52834.1.S1_at--539--3711NONE
CTAGTTCTGGTCTTCTTTAACCCAT
NONE
Os.52834.1.S1_at--726--10311NONE
TTTAACCCATAGTTTGCTGTACTAG
NONE
Os.52834.1.S1_at--529--9971Chr01:29486858..29487230 (25 bp)
TACCATTTCCATAATTTTGCAGCTT
LOC_Os01g50760
Os.52834.1.S1_at--153--9751Chr05:6447602..6447625 (24 bp)
TAATTTTGCAGCTTGCCTGATGCCC
LOC_Os05g11428
Os.52834.1.S1_at--177--10151Chr05:6447559..6447583 (25 bp)
TATCCTCTGTGCCTCTCTGGCTATA
LOC_Os05g11428
Os.52834.1.S1_at--998--3911Chr05:6447543..6447567 (25 bp)
CTGGCTATATCCTCCTCTGAACTGG
LOC_Os05g11428
Target Sequence 
AAAGGTCTAATTTGTAGCCCATCAGATGAATCATTCGGATTATATTTTGTCCCAATCAATGGTTATGGCTCAAACTTTTC
TCAAGTTGATGAACAGTGTGCAGCTAGTTCTGGTCTTCTTTAACCCATAGTTTGCTGTACTAGAGCCCTGTGAAAAGAGG
ACTCAATTGATTTGGGAGGTTCTTACTTTTGCGTCGACGCATCAAGCATTACATCCATCAAGTTTACTTCAACAGAATCC
TGGTGGCAAGTTACCATTTCCATAATTTTGCAGCTTGCCTGATGCCCTGATGACCCTGCACCTGCTATCCTCTGTGCCTC
TCTGGCTATATCCTCCTCTGAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis