Browse Element(s) Details


OsAffx.24085.1.S1_at

Description tigr:9630.m00269
TID=OsAffx.24085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0365010/11expressed protein
LOC_Os11g183822/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03630OsAffx.20490.1.S1_at6/112+1499923..1503468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g03640Os.44418.2.S1_at11/112+1507314..1511605hypothetical protein
LOC_Os02g03640Os.44418.1.S1_at2/112+1507314..1511605hypothetical protein
LOC_Os02g03650OsAffx.24085.1.S1_at10/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.31040.1.S1_at5/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.26303.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.4302.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24085.1.S1_at--863--9252Chr03:14210885..14210909 (25 bp)
TCCTCACTGCTAGATCCAGGGCGAG
NONE
OsAffx.24085.1.S1_at--223--7493Chr03:14210909..14210928 (20 bp)
GTGGGCAACACCAATCTCATAGCCT
NONE
OsAffx.24085.1.S1_at--455--8871Chr02:1518686..1518710 (25 bp)
TGAGGCATGGTGACACCCACTGGAT
LOC_Os02g03650
OsAffx.24085.1.S1_at--754--1954Chr06:15792847..15792867 (21 bp)
ACTGGATCTAGCTCTCATGGCGGCG
NONE
OsAffx.24085.1.S1_at--496--2332Chr02:1518742..1518766 (25 bp)
AAAGCAAGGTCATCGGGAACTGGGA
LOC_Os02g03650
OsAffx.24085.1.S1_at--402--6173Chr03:14211034..14211058 (25 bp)
GAGGATAAGGCCCAACGTGTGCTCC
NONE
OsAffx.24085.1.S1_at--210--9271Chr02:1518796..1518820 (25 bp)
TCCTCCTTCAATGTGCGTTGTCGAT
LOC_Os02g03650
OsAffx.24085.1.S1_at--890--9251NONE
TCCTCACCCGATTGTGTGCAGGAAT
NONE
OsAffx.24085.1.S1_at--758--4971Chr02:1523002..1523026 (25 bp)
GCATCTGTGAGATTCAGCTCTGCTT
LOC_Os02g03650
OsAffx.24085.1.S1_at--954--3391Chr02:1523016..1523040 (25 bp)
CAGCTCTGCTTGATCGGATTCTAGG
LOC_Os02g03650
OsAffx.24085.1.S1_at--469--1531Chr02:1523086..1523110 (25 bp)
AGCAGTGTCTCTCGTTCAATGTAGT
LOC_Os02g03650
Target Sequence 
TCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCA
TGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGA
ACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGT
GATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCT
GCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTC
AATGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis