Browse Element(s) Details


OsAffx.24086.1.S1_at

Description tigr:9630.m00270
TID=OsAffx.24086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0366011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03630OsAffx.20490.1.S1_at6/112+1499923..1503468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g03640Os.44418.2.S1_at11/112+1507314..1511605hypothetical protein
LOC_Os02g03640Os.44418.1.S1_at2/112+1507314..1511605hypothetical protein
LOC_Os02g03650OsAffx.24085.1.S1_at10/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.31040.1.S1_at5/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.26303.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.4302.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24086.1.S1_at--1130--1911Chr02:1525603..1525627 (25 bp)
ACGGCGGGAAGCTCTACGCGTTGCA
LOC_Os02g03660
OsAffx.24086.1.S1_at--60--1671Chr02:1525675..1525699 (25 bp)
AGCCCAAGGTGTCGTCGTGCGTTCA
LOC_Os02g03660
OsAffx.24086.1.S1_at--974--7211Chr02:1525691..1525715 (25 bp)
GTGCGTTCACCACATAGCCGGCGAC
LOC_Os02g03660
OsAffx.24086.1.S1_at--503--9171Chr02:1525720..1525744 (25 bp)
TGCCGCCGAACAAGCTACCGGAGGA
LOC_Os02g03660
OsAffx.24086.1.S1_at--453--8591Chr02:1525798..1525822 (25 bp)
TGGTCCGGCACCTGTACAGCAGGTT
LOC_Os02g03660
OsAffx.24086.1.S1_at--322--3531Chr02:1525973..1525997 (25 bp)
CATGCGAGGGAACCGCGTCTTCTAC
LOC_Os02g03660
OsAffx.24086.1.S1_at--174--7151Chr02:1525989..1526013 (25 bp)
GTCTTCTACACGAACGACGTCGAGG
LOC_Os02g03660
OsAffx.24086.1.S1_at--614--8371Chr02:1526012..1526036 (25 bp)
GGCGTACAGTAGCACGCACAGCTAT
LOC_Os02g03660
OsAffx.24086.1.S1_at--184--5131Chr02:1526027..1526051 (25 bp)
GCACAGCTATCTTGTCTACGACATG
LOC_Os02g03660
OsAffx.24086.1.S1_at--665--9611Chr02:1526053..1526077 (25 bp)
TCATGCGGTCAAATGGCCCGGTTTT
LOC_Os02g03660
OsAffx.24086.1.S1_at--153--8411Chr02:1526067..1526091 (25 bp)
GGCCCGGTTTTTCCAATATATGATG
LOC_Os02g03660
Target Sequence 
ACGGCGGGAAGCTCTACGCGTTGCACGGCCACGGCAACCTCTGCTCCTACGACCTCATCGCCGGCGACGGCGAGCCCAAG
GTGTCGTCGTGCGTTCACCACATAGCCGGCGACGCGCTGCCGCCGAACAAGCTACCGGAGGAGCACGACGCGGGGCACCA
CCTCGTCCCGTCGGCCACCGGCGGCGAGCTGCTGCTGGTCCGGCACCTGTACAGCAGGTTCCTGGGCAGGCACTTCACCG
TGTTCGTGGCGGACGTGGGCGGCGCGCGGTGGTCGGAGGCGGCGGCGTCGAGCCTGCGCGACCAGCTCATCTTCGTCGGC
ACGGGCTGCTCCAGGGCGCTCACGGCGTCGCACTACGGCGGCGTGGGCGCCATGCGAGGGAACCGCGTCTTCTACACGAA
CGACGTCGAGGCGTACAGTAGCACGCACAGCTATCTTGTCTACGACATGATCATGCGGTCAAATGGCCCGGTTTTTCCAA
TATATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis