Browse Element(s) Details


Os.28399.1.S3_at

Description gb:CB629783
DB_XREF= gi:29624772
DB_XREF=OSIIEb06E16.r
CLONE=OSIIEb06E16
TID=Os.28399.1
CNT=15
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.28399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031M24, full insert sequence
FL= gb:AK065610.1 gb:AK063802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0370011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28399.1.S3_at--982--4711Chr02:1551375..1551399 (25 bp)
GCTGGACTTCTTTTTATCAATCATA
LOC_Os02g03700
Os.28399.1.S3_at--934--931Chr02:1551340..1551364 (25 bp)
AGGCAAGACACTTTTCTCACTGTAC
LOC_Os02g03700
Os.28399.1.S3_at--151--4951Chr02:1551288..1551312 (25 bp)
GCATTCACCGTTCCTATGATTTGAC
LOC_Os02g03700
Os.28399.1.S3_at--773--6511Chr02:1551271..1551295 (25 bp)
GATTTGACGCATATCACATTCGGTG
LOC_Os02g03700
Os.28399.1.S3_at--1030--6451Chr02:1551155..1551179 (25 bp)
GATCAAGATTCTTTTTCCATCAGAG
LOC_Os02g03700
Os.28399.1.S3_at--326--4511Chr02:1551107..1551131 (25 bp)
GCCGATTGGCACTAGCTGGACATTT
LOC_Os02g03700
Os.28399.1.S3_at--1125--1091Chr02:1551065..1551089 (25 bp)
AGTGGATTCCCTACATTTTGAGCTG
LOC_Os02g03700
Os.28399.1.S3_at--14--10411Chr02:1551050..1551074 (25 bp)
TTTTGAGCTGGATGCCCTGATCAGT
LOC_Os02g03700
Os.28399.1.S3_at--47--2371Chr02:1550989..1551013 (25 bp)
AAAGCCAGTGACAGCCTTCAGGAGA
LOC_Os02g03700
Os.28399.1.S3_at--763--3091Chr02:1550940..1550964 (25 bp)
AATATAAATATCTGACCACCACCCC
LOC_Os02g03700
Os.28399.1.S3_at--25--3371Chr02:1550924..1550948 (25 bp)
CACCACCCCGGAGATAGATTTGAAT
LOC_Os02g03700
Target Sequence 
GCTGGACTTCTTTTTATCAATCATATCATTTNCACAGGCAAGACACTTTTCTCACTGTACAAATATTCAAAGTCTCCAAG
NAGCATCGCATTCACCGTTCCTATGATTTGACGCATATCACATTCGGTGACTCATAACCAAAGTTGGAATTNGGGTTCCT
TTTGTTTATAAAAAGAAAAAAAAAAGAAAACCTGTAACCTGTTGTGGGAATATATGCTGCGAGATCAAGATTCTTTTTCC
ATCAGAGATAGATAAGGAAGAGACAAAGTAGCCGATTGGCACTAGCTGGACATTTGAACTTGTTCCATGAAAAGTGGATT
CCCTACATTTTGAGCTGGATGCCCTGATCAGTGAGGTGTAAATTTTTAGTGGTTAGAATATTCTGCTAAAAGCCAGTGAC
AGCCTTCAGGAGAACATGTTCTGAAAAGCTGTCGAAGAATATAAATATCTGACCACCACCCCGGAGATAGATTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28399.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis