Browse Element(s) Details


Os.56074.1.S1_at

Description gb:AK109213.1
DB_XREF= gi:32994422
TID=Os.56074.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D07, full insert sequence.
FL= gb:AK109213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0371011/11expressed protein
LOC_Os05g485901/11Auxin-responsive protein IAA8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56074.1.S1_at--305--10011Chr02:1559079..1559103 (25 bp)
TAGCTGCGGCGCGAATTCGATCTTG
LOC_Os02g03710
Os.56074.1.S1_at--304--4591Chr02:1559069..1559093 (25 bp)
GCGAATTCGATCTTGCCAGCTCGAG
LOC_Os02g03710
Os.56074.1.S1_at--15--431Chr02:1559060..1559084 (25 bp)
ATCTTGCCAGCTCGAGCTAAGCTAG
LOC_Os02g03710
Os.56074.1.S1_at--571--1571Chr02:1559037..1559061 (25 bp)
AGCTAAGCTGCCCATGGCGCCGGCA
LOC_Os02g03710
Os.56074.1.S1_at--739--871Chr02:1559024..1559048 (25 bp)
ATGGCGCCGGCAATGTTCGTCGGAA
LOC_Os02g03710
Os.56074.1.S1_at--80--8231Chr02:1559016..1559040 (25 bp)
GGCAATGTTCGTCGGAATCGCCGCC
LOC_Os02g03710
Os.56074.1.S1_at--1143--7611Chr02:1558795..1558819 (25 bp)
GGGAGTACCAGTGCCGCGTCCACGA
LOC_Os02g03710
Os.56074.1.S1_at--245--9311Chr02:1558730..1558754 (25 bp)
TCCCCATCGCCATGAGAAGAGAACA
LOC_Os02g03710
Os.56074.1.S1_at--1003--2992Chr05:27764682..27764732 (24 bp)
AATGATTTTCTCTTGCGGAGACATT
LOC_Os05g48590
Os.56074.1.S1_at--739--2291Chr02:1558646..1558670 (25 bp)
AAATGTCGCTTGTAGTTTAGAGCAG
LOC_Os02g03710
Os.56074.1.S1_at--133--3891Chr02:1558608..1558632 (25 bp)
CTGTGTAGAATTTATCCTTTTGAAA
LOC_Os02g03710
Target Sequence 
TAGCTGCGGCGCGAATTCGATCTTGCCAGCTCGAGCTAAGCTAGCTAAGCTGCCCATGGCGCCGGCAATGTTCGTCGGAA
TCGCCGCCGCCGGAGGGAAGAAGGGAGGGGCGAAGGATGAGGCGGAGGAGCTGCGGCGGCGGAACGCGGAGCTGGAGAGG
GAGGTGGCGGCGCTGCGGGCGGAGGTGGCGGCGGCGCGGCGGCGCGCGGAGACGGCGGAGGAGGCCGAGGAGCGGCTGTG
CGTGCAGCTGGGCGAGGCGGAGGTGGAGGCGGTGGAGCTCGCGCGGGAGTACCAGTGCCGCGTCCACGACCTCGCCCGCG
AGCTCGCCGCCGCCAGACTGCTCGTCTCATCCCCATCGCCATGAGAAGAGAACAAGCTAGCTAGATTGTTGCTTGATTCT
TGGTGTTAATGATTTTCTCTTGCGGAGACATTGAAATGTCGCTTGTAGTTTAGAGCAGTAATTAAGAAGATCTGTGTAGA
ATTTATCCTTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis