Browse Element(s) Details


Os.27754.1.S1_at

Description gb:CB622549
DB_XREF= gi:29617537
DB_XREF=OSIIEa09G10.r
CLONE=OSIIEa09G10
TID=Os.27754.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27754 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197269.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0372011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27754.1.S1_at--820--6511Chr02:1562607..1562631 (25 bp)
GATATTCTCGCTGTGGATACTCCAT
LOC_Os02g03720
Os.27754.1.S1_at--99--8671Chr02:1562618..1562642 (25 bp)
TGTGGATACTCCATCAGATATAGCT
LOC_Os02g03720
Os.27754.1.S1_at--427--5391Chr02:1562643..1562667 (25 bp)
GAAGCAGTCATGGTCAGTACCAACG
LOC_Os02g03720
Os.27754.1.S1_at--225--5631Chr02:1562667..1562691 (25 bp)
GACAAATCTACTCAATCAGGCCCAA
LOC_Os02g03720
Os.27754.1.S1_at--1125--8891Chr02:1562695..1562719 (25 bp)
TGAGAGCCCGCTTCATTGGACAAGG
LOC_Os02g03720
Os.27754.1.S1_at--673--2211Chr02:1562812..1562831 (20 bp)
ACAAGCAGGTCTGTGGCCGTGCTGA
LOC_Os02g03720
Os.27754.1.S1_at--946--8711Chr02:1562861..1562885 (25 bp)
TGTCGGCGCATCTAGAAGGCGCACT
LOC_Os02g03720
Os.27754.1.S1_at--484--2951Chr02:1562876..1562900 (25 bp)
AAGGCGCACTGAACATAAGCTTCGA
LOC_Os02g03720
Os.27754.1.S1_at--500--2511Chr02:1562887..1562911 (25 bp)
AACATAAGCTTCGACGGCGTGTACC
LOC_Os02g03720
Os.27754.1.S1_at--465--8751Chr02:1562906..1562930 (25 bp)
TGTACCACTCTCCTGTAGGTTCTGA
LOC_Os02g03720
Os.27754.1.S1_at--723--7291Chr02:1562946..1562970 (25 bp)
GTGGTATGGTTCACCGGCAATCCTC
LOC_Os02g03720
Target Sequence 
GATATTCTCGCTGTGGATACTCCATCAGATATAGCTGAAGCAGTCATGGTCAGTACCAACGACAAATCTACTCAATCAGG
CCCAACCTTGAGAGCCCGCTTCATTGGACAAGGCTACAAGCAGGTCTGTGGCCGTGCTGATGTGTGGGGAGACGGCGTCG
TTCCCGAGGTGTCGGCGCATCTAGAAGGCGCACTGAACATAAGCTTCGACGGCGTGTACCACTCTCCTGTAGGTTCTGAC
GATGAGCAGAGGCCGTGGTATGGTTCACCGGCAATCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis