Browse Element(s) Details


Os.17347.1.S1_at

Description gb:AK105854.1
DB_XREF= gi:32991063
TID=Os.17347.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17347 (NCBI UniGene Cluster)
UG_TITLE=Clone OSl186 putative heat shock protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H03, full insert sequence.
FL= gb:AK060381.1 gb:AK105854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0384011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed
LOC_Os02g03860Os.8662.1.S1_at11/112+1637581..1641852ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17347.1.S1_at--152--7511Chr02:1628326..1628350 (25 bp)
GTGGATGAAAAACTCACCTTTGAAC
LOC_Os02g03840
Os.17347.1.S1_at--1000--10111Chr02:1628410..1628434 (25 bp)
TATGATGTCGAGATGGACGTCCAAA
LOC_Os02g03840
Os.17347.1.S1_at--226--6891Chr02:1628491..1628515 (25 bp)
GTATACCAAGATAATGCCCAGGATG
LOC_Os02g03840
Os.17347.1.S1_at--973--1691Chr02:1628538..1628562 (25 bp)
AGCCAAGGCAGCTGATCCGATCAAA
LOC_Os02g03840
Os.17347.1.S1_at--684--1291Chr02:1628673..1628697 (25 bp)
AGATGACATAACAAGCCCAAAGGCT
LOC_Os02g03840
Os.17347.1.S1_at--602--1431Chr02:1628730..1628754 (25 bp)
AGAACTTCCGCATGAGTCTTTACAT
LOC_Os02g03840
Os.17347.1.S1_at--755--7991Chr02:1628775..1628799 (25 bp)
GGATGAGCAAACACTCTCCTTGATA
LOC_Os02g03840
Os.17347.1.S1_at--740--2171Chr02:1628785..1628809 (25 bp)
ACACTCTCCTTGATAGAACCCGATA
LOC_Os02g03840
Os.17347.1.S1_at--273--5451Chr02:1628800..1628824 (25 bp)
GAACCCGATACAGGCAACGCTGAAA
LOC_Os02g03840
Os.17347.1.S1_at--808--4451Chr02:1628829..1628853 (25 bp)
GCCTAACGAGGCTGACAGTGTTCAA
LOC_Os02g03840
Os.17347.1.S1_at--334--8791Chr02:1628847..1628871 (25 bp)
TGTTCAAAGCCCTCCTTGCACAGAA
LOC_Os02g03840
Target Sequence 
GTGGATGAAAAACTCACCTTTGAACAAGAAAAAGAAAAGGTAGAAGGCTCTGAAGAAACAAAAGAACCAGTAAAAGAACA
GAGTTATGATGTCGAGATGGACGTCCAAAAATCATTGGAAACTGATGAAGAGCTCAAAAGGAACACTTGTGATTTGGAAG
CACCAGTATACCAAGATAATGCCCAGGATGAAATTTCTAGCAAACTGATATCAGCCAAGGCAGCTGATCCGATCAAAAAA
ATGGAAGCTAGAGACTTTGAATTGGATGAAGAGTCATTTGATACAGTTTGTCAGGAAAACGTGGAAGCAGCAACAGAAAT
TGAAGACGGAAGCTTGAATAGGGACCAAGATGACATAACAAGCCCAAAGGCTTCACAAGAGGATGCTTTGGAGGAAGTAG
GAACAGAACTTCCGCATGAGTCTTTACATGAAAATAGACATGGTGCAAAGGATGAGCAAACACTCTCCTTGATAGAACCC
GATACAGGCAACGCTGAAAAATTGCCTAACGAGGCTGACAGTGTTCAAAGCCCTCCTTGCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis