Browse Element(s) Details


Os.8662.1.S1_at

Description gb:CB665098
DB_XREF= gi:29668823
DB_XREF=OSJNEd11D20.r
CLONE=OSJNEd11D20
TID=Os.8662.1
CNT=87
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.8662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089B14, full insert sequence
FL= gb:AK061919.1 gb:AK066913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0386011/11ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed
LOC_Os02g03860Os.8662.1.S1_at11/112+1637581..1641852ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8662.1.S1_at--89--6431Chr02:1640211..1640235 (25 bp)
GATCTTCTATCCGACTCTGAGAGGA
LOC_Os02g03860
Os.8662.1.S1_at--585--231Chr02:1640240..1640264 (25 bp)
ATATACCATCGACACCTTTACAAAG
LOC_Os02g03860
Os.8662.1.S1_at--1072--2311Chr02:1640261..1640285 (25 bp)
AAAGGGCATCCCTGATGCACGGACT
LOC_Os02g03860
Os.8662.1.S1_at--839--5091Chr02:1640277..1640301 (25 bp)
GCACGGACTTACTTGAATACTCTTC
LOC_Os02g03860
Os.8662.1.S1_at--877--1471Chr02:1640577..1640601 (25 bp)
AGAATATGGGTCTCCTCTTGGCAGA
LOC_Os02g03860
Os.8662.1.S1_at--869--71Chr02:1641152..1641176 (25 bp)
ATTGCCAAAAGTGAGCTGACGGAGC
LOC_Os02g03860
Os.8662.1.S1_at--985--6611Chr02:1641430..1641454 (25 bp)
GTTGGACATCAGAAACTTCCTGTAG
LOC_Os02g03860
Os.8662.1.S1_at--1080--3631Chr02:1641445..1641469 (25 bp)
CTTCCTGTAGGCCATAAATCTCTCA
LOC_Os02g03860
Os.8662.1.S1_at--1126--611Chr02:1641482..1641506 (25 bp)
ATGCTCGGACACTCCATAATGGTTT
LOC_Os02g03860
Os.8662.1.S1_at--567--9551Chr02:1641507..1641531 (25 bp)
TCTTTTCCAGTGACAGCCGGCGCTG
LOC_Os02g03860
Os.8662.1.S1_at--1067--1651Chr02:1641521..1641545 (25 bp)
AGCCGGCGCTGTAAGCATACCAATG
LOC_Os02g03860
Target Sequence 
GATCTTCTATCCGACTCTGAGAGGATTAAATATACCATCGACACCTTTACAAAGGGCATCCCTGATGCACGGACTTACTT
GAATACTCTTCAGGAGATCAGGATAAAGAGTGGCCTTATAGATGATATGGGTGCTGAGGCTATGATGATGGAAGCCCTTG
AGAAAGTTGAGAAGGAGATTAAGAAGCCACTTCTGAGGAGTGACAAGAAGAATATGGGTCTCCTCTTGGCAGAGTTTGAG
AAGATAAACAAAAAGCTTGGAATCCGCAAGGAGGATCTTCCCAAGATTGAGGAAGAGCTTGAATTGGAAATTGCCAAAAG
TGAGCTGACGGAGCTTAAGAAGGAATGTGTTGAAGCAATGGAGGTTCAACTAAAGAGGGAGGAGTTCAAAGACGAGGAGA
TGCCTGATGTCAAGAAGTTGGACATCAGAAACTTCCTGTAGGCCATAAATCTCTCAAGGCATTTTGAAATGCTCGGACAC
TCCATAATGGTTTTCTTTTCCAGTGACAGCCGGCGCTGTAAGCATACCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis