Browse Element(s) Details


Os.20210.1.S1_at

Description gb:AK121278.1
DB_XREF= gi:37990901
TID=Os.20210.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108C10, full insert sequence.
FL= gb:AK121278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1389011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13870Os.2678.1.S1_at11/112+7516220..7519336Aquaporin NIP1.2, putative, expressed
LOC_Os02g13880OsAffx.24236.1.S1_at11/112+7524306..7524563expressed protein
LOC_Os02g13890Os.20210.1.S1_at11/112+7542597..7547070zinc finger family protein, putative, expressed
LOC_Os02g13900OsAffx.24237.2.S1_at10/112+7548571..7551644expressed protein
LOC_Os02g13910OsAffx.24238.1.S1_s_at11/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.19542.3.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.21754.1.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.10609.1.S1_at1/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20210.1.S1_at--263--1131Chr02:7545399..7545423 (25 bp)
AGTGCTTCTGTTGGCCATGTTGGAC
LOC_Os02g13890
Os.20210.1.S1_at--1061--2311Chr02:7546630..7546652 (23 bp)
AAAGGTGCTTTTGTGGGCTGTGCTC
LOC_Os02g13890
Os.20210.1.S1_at--353--7571Chr02:7546642..7546666 (25 bp)
GGGCTGTGCTCTCAATGGTAGCTTA
LOC_Os02g13890
Os.20210.1.S1_at--851--6951Chr02:7546659..7546683 (25 bp)
GTAGCTTAGTATCAACCCGAGACAC
LOC_Os02g13890
Os.20210.1.S1_at--124--2931Chr02:7546715..7546739 (25 bp)
AAGGCACCCGATATCCTTATGGGAT
LOC_Os02g13890
Os.20210.1.S1_at--240--5391Chr02:7546807..7546831 (25 bp)
GAAGCAATCGCTTTAGGTCTCTAGT
LOC_Os02g13890
Os.20210.1.S1_at--786--591Chr02:7546832..7546856 (25 bp)
ATGCGTTGCGTCTTCTGGTAAATAC
LOC_Os02g13890
Os.20210.1.S1_at--774--331Chr02:7546853..7546877 (25 bp)
ATACATTCTGGAACTCTCTGTCAAG
LOC_Os02g13890
Os.20210.1.S1_at--269--4671Chr02:7546888..7546912 (25 bp)
GCGGTTTTGCGATCTTTTCACTTAT
LOC_Os02g13890
Os.20210.1.S1_at--557--10471Chr02:7546927..7546951 (25 bp)
TTACGCAATTGTACAGTCTGCCATT
LOC_Os02g13890
Os.20210.1.S1_at--444--9891Chr02:7547010..7547034 (25 bp)
TACATTGGATCCCTTCTTGCTTCAT
LOC_Os02g13890
Target Sequence 
AGTGCTTCTGTTGGCCATGTTGGACGAGTAGCTGAGGCTGATTTTCGTGCCGGTGATGGTGGTTATGCTGCATGTTACAC
ATACAGTTGTAGCAAAGGTGCTTTTGTGGGCTGTGCTCTCAATGGTAGCTTAGTATCAACCCGAGACACAGAAAATGCCC
GATTTTATGGTGGTCCAATAAAGGCACCCGATATCCTTATGGGATCCATGGCTAGACCACCCGCAGCCGCTGCGCTCTAC
AAGGTTCTGTCAGAATTGTTTGACAATCCTGAGAAGCAATCGCTTTAGGTCTCTAGTATGCGTTGCGTCTTCTGGTAAAT
ACATTCTGGAACTCTCTGTCAAGTAATTGGATTGCGGTTTTGCGATCTTTTCACTTATTCGTTGGTTGCAGTTTACGCAA
TTGTACAGTCTGCCATTCATTGACACGCCAAAGGTTTCACATCATGGTTACCACAAAACCAAATGTAAATACATGTACAT
TGGATCCCTTCTTGCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis