Browse Element(s) Details


OsAffx.24237.2.S1_at

Description tigr:9630.m01285
TID=OsAffx.24237.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161549 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1390010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13880OsAffx.24236.1.S1_at11/112+7524306..7524563expressed protein
LOC_Os02g13890Os.20210.1.S1_at11/112+7542597..7547070zinc finger family protein, putative, expressed
LOC_Os02g13900OsAffx.24237.2.S1_at10/112+7548571..7551644expressed protein
LOC_Os02g13910OsAffx.24238.1.S1_s_at11/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.19542.3.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.21754.1.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.10609.1.S1_at1/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24237.2.S1_at--13--1091Chr02:7549220..7549244 (25 bp)
AGGGCAGCAGCCTCATCCCGTGGCT
LOC_Os02g13900
OsAffx.24237.2.S1_at--619--8351Chr02:7549161..7549185 (25 bp)
GGCGGCTCGTCGTCCAAGTTCCCGG
LOC_Os02g13900
OsAffx.24237.2.S1_at--489--1771NONE
ACCGAAACGCCGCGCGCAAGGTTCG
NONE
OsAffx.24237.2.S1_at--1074--7511Chr02:7548868..7548892 (25 bp)
GTGGCTTGCCGGGTTCCAGATATCC
LOC_Os02g13900
OsAffx.24237.2.S1_at--1054--7651Chr02:7548858..7548882 (25 bp)
GGGTTCCAGATATCCTCCGCCGGGC
LOC_Os02g13900
OsAffx.24237.2.S1_at--569--691Chr02:7548747..7548771 (25 bp)
ATGAGCGGAGCGTGCTCGCCGGTCG
LOC_Os02g13900
OsAffx.24237.2.S1_at--492--1071Chr02:7548665..7548689 (25 bp)
AGGGCGGCAAGATGACCGGGCTGGT
LOC_Os02g13900
OsAffx.24237.2.S1_at--692--5791Chr02:7548652..7548676 (25 bp)
GACCGGGCTGGTGAAGGCGTGGGAA
LOC_Os02g13900
OsAffx.24237.2.S1_at--588--1651Chr02:7548623..7548647 (25 bp)
AGCGCATCCATGAGGAGTGCGGCTC
LOC_Os02g13900
OsAffx.24237.2.S1_at--727--9231Chr02:7548617..7548641 (25 bp)
TCCATGAGGAGTGCGGCTCCGACGA
LOC_Os02g13900
OsAffx.24237.2.S1_at--724--1131Chr02:7548608..7548632 (25 bp)
AGTGCGGCTCCGACGATCTCGAGCT
LOC_Os02g13900
Target Sequence 
AGGGCAGCAGCCTCATCCCGTGGCTCAAGACCCTCTCCTCCGCCGGCGTCGGCATCGGCGGCGGCTCGTCGTCCAAGTTC
CCGGCGCACTACTCCTACTTCGGCGGCGGCTCCATCAGCGCGCCGCCGAAAGCCCCCCCACCGAAACGCCGCGCGCAAGG
TTCGCCTCAGCCGCCGCCGCCGCCGGGCGGCGGCAACGACGCGGCGGCGTGGCTTGCCGGGTTCCAGATATCCTCCGCCG
GGCCGTCGTCCCCGACGTACAGCCTCGTGGCTCCTCCTCCCAACCCGTTCGGCGCCGCCGCCGCCGCCGCGGGGTCCTCC
TCGAGGGTGATGAGCGGAGCGTGCTCGCCGGTCGCCGGCGGCGACGTCCAGATGGCCGACGCGGCGCGCCGCGAGTTCGC
GTTCGGCGGCGAGGGCGGCAAGATGACCGGGCTGGTGAAGGCGTGGGAAGGGGAGCGCATCCATGAGGAGTGCGGCTCCG
ACGATCTCGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24237.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis