Browse Element(s) Details


OsAffx.10609.1.S1_at

Description gb:NM_184094.1
DB_XREF= gi:34895281
GEN=P0698G03.15
TID=OsAffx.10609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0698G03.15 (P0698G03.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g139101/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13890Os.20210.1.S1_at11/112+7542597..7547070zinc finger family protein, putative, expressed
LOC_Os02g13900OsAffx.24237.2.S1_at10/112+7548571..7551644expressed protein
LOC_Os02g13910OsAffx.24238.1.S1_s_at11/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.19542.3.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.21754.1.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.10609.1.S1_at1/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13920OsAffx.13875.1.S1_at1/112+7578016..7579076retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13930OsAffx.2603.1.S1_at11/112+7582245..7586531expressed protein
LOC_Os02g13930OsAffx.15672.1.S1_x_at1/112+7582245..7586531expressed protein
LOC_Os02g13940NANA2+7591255..7591569hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10609.1.S1_at--697--7232Chr04:29864646..29864700 (25 bp)
GTCGCGCGAGGCGAAGACCACCGGG
NONE
OsAffx.10609.1.S1_at--225--5952Chr04:29864789..29865228 (25 bp)
GAGACTAAATCGAACCAAACCATGC
NONE
OsAffx.10609.1.S1_at--486--3031Chr01:925632..925656 (25 bp)
AATCGAACCAAACCATGCACCGGAG
NONE
OsAffx.10609.1.S1_at--9--1712Chr01:925638..925662 (25 bp)
ACCAAACCATGCACCGGAGAGGATG
NONE
OsAffx.10609.1.S1_at--915--5151Chr01:925717..925741 (25 bp)
GCAAGCCCGCGAGTTGATGGCGACG
NONE
OsAffx.10609.1.S1_at--543--8051Chr01:925743..925767 (25 bp)
GGAGATCGGCTAGGGCAGGGCAGGA
NONE
OsAffx.10609.1.S1_at--505--6031Chr01:925773..925797 (25 bp)
GAGATGAGAAAACGCACCCCTCCAA
NONE
OsAffx.10609.1.S1_at--341--9211Chr01:925793..925817 (25 bp)
TCCAACTCCAACCACAGGAAACGGG
NONE
OsAffx.10609.1.S1_at--1096--9191Chr01:925799..925823 (25 bp)
TCCAACCACAGGAAACGGGCAGGAA
NONE
OsAffx.10609.1.S1_at--741--8071Chr01:925827..925851 (25 bp)
GGAGCTCGGAACTCGGAACTCGGAA
NONE
OsAffx.10609.1.S1_at--989--9431Chr01:925832..925856 (25 bp)
TCGGAACTCGGAACTCGGAAGAGAA
NONE
Target Sequence 
GTCGCGCGAGGCGAAGACCACCGGGGAGAAGGGGCCGCCGCCAGCGGAGGAGGCGGCCTGGGATTTGGGGGCCGAACGAA
CGAACGAACGAACGGGGCCACCGGAGGAGGAGACTAAATCGAACCAAACCATGCACCGGAGAGGATGCGGCAGGACGCCG
GGAGACGCTGCTCGCGGGGTGGAGATCGGCGCCGCCGGCCGGCAAGCCCGCGAGTTGATGGCGACGGGGAGATCGGCTAG
GGCAGGGCAGGAAGGGGGAGATGAGAAAACGCACCCCTCCAACTCCAACCACAGGAAACGGGCAGGAAGGGGGAGCTCGG
AACTCGGAACTCGGAAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis