Browse Element(s) Details


Os.20246.1.S1_at

Description gb:AK062813.1
DB_XREF= gi:32972831
TID=Os.20246.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042E19.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E04, full insert sequence.
FL= gb:AK062813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3244411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32400OsAffx.30640.1.S1_x_at10/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.30640.1.S1_at8/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400Os.19611.1.S1_a_at6/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.17159.1.S1_x_at2/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32410Os.46500.2.S1_at7/1110+16664536..16665604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g32420OsAffx.20272.1.S1_at7/1110+16669329..16669754hypothetical protein
LOC_Os10g32444Os.20246.1.S1_at11/1110+16676065..16677333expressed protein
LOC_Os10g32470Os.46467.1.S1_at11/1110+16678291..16681525expressed protein
LOC_Os10g32470Os.46467.2.S1_x_at11/1110+16678291..16681525expressed protein
LOC_Os10g32500OsAffx.30641.1.S1_at11/1110+16689531..16692082expressed protein
LOC_Os10g32509NANA10+16696487..16696798hypothetical protein
LOC_Os10g32520Os.8753.4.S1_x_at9/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.1.S1_at8/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.4.S1_at4/1110+16698772..16705749expressed protein
LOC_Os10g32520OsAffx.1293.1.S1_x_at1/1110+16698772..16705749expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20246.1.S1_at--36--3911Chr10:16677147..16677171 (25 bp)
CTGGTGATGCACACGGCCTTGCGTG
LOC_Os10g32444
Os.20246.1.S1_at--65--4352Chr10:16677132..16677156 (25 bp)
GCCTTGCGTGGATGCCCTCCGTGGC
LOC_Os10g32444
Os.20246.1.S1_at--984--4171Chr10:16677020..16677044 (25 bp)
CCCAGGAGCGCGATGAGGCCTACCA
LOC_Os10g32444
Os.20246.1.S1_at--707--2551Chr10:16676886..16676910 (25 bp)
AACTGCCAGAACACGCTGCGACACG
LOC_Os10g32444
Os.20246.1.S1_at--915--8931Chr10:16676829..16676853 (25 bp)
TGACGCCGATCGATTCACCGTCGGG
LOC_Os10g32444
Os.20246.1.S1_at--1105--10491Chr10:16676816..16676840 (25 bp)
TTCACCGTCGGGATGAGGCACGAGC
LOC_Os10g32444
Os.20246.1.S1_at--679--10351Chr10:16676746..16676770 (25 bp)
TTTTTTCGGTCTTTGGTAGGCTGTG
LOC_Os10g32444
Os.20246.1.S1_at--885--7131Chr10:16676738..16676762 (25 bp)
GTCTTTGGTAGGCTGTGTCAATCTA
LOC_Os10g32444
Os.20246.1.S1_at--27--8351Chr10:16676728..16676752 (25 bp)
GGCTGTGTCAATCTATTGTATTGCG
LOC_Os10g32444
Os.20246.1.S1_at--833--6531Chr10:16676697..16676721 (25 bp)
GATTTCATCAGATCTCCTATAGTTG
LOC_Os10g32444
Os.20246.1.S1_at--817--9491Chr10:16676685..16676709 (25 bp)
TCTCCTATAGTTGAGTTGGTTGTAT
LOC_Os10g32444
Target Sequence 
CTGGTGATGCACACGGCCTTGCGTGGATGCCCTCCGTGGCGGGCTGGCGGCNTCGCGCGAGACGGACGGGTGCGCCGCGA
GGAGGGAGGGGACGAGGCCGATGAGGCGGCGGCGGAGGAGAAGCGGGCCCAGGAGCGCGATGAGGCCTACCAGCGGGCGC
TGGACGGCGCCACGCCCGTGTCGCCGGAGTCGCTCGCCGCGATGCTCGACCAGGCGCTGCAGTCCGTGCGCCAGCCGCCG
CCGCCGCCGCAGCAGCAGCAGAACTGCCAGAACACGCTGCGACACGGCGGCATGGTTCGCCGGATGCGCACGGGATTCTG
ACGCCGATCGATTCACCGTCGGGATGAGGCACGAGCGATGCTACGCCAACTAGTTTTGGTTTTGTATGTTACTGNCCCAA
ATTTTTTCGGTCTTTGGTAGGCTGTGTCAATCTATTGTATTGCGAGAGCTGATTTCATCAGATCTCCTATAGTTGAGTTG
GTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis