Browse Element(s) Details


Os.20335.1.S1_at

Description gb:AK067766.1
DB_XREF= gi:32977784
TID=Os.20335.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plasma membrane associated protein (P0454A11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120F13, full insert sequence.
FL= gb:AK067766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5044011/11AWPM-19-like membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed
LOC_Os01g50430OsAffx.21482.1.S1_at8/111+29279029..29280651hypothetical protein
LOC_Os01g50440Os.20335.1.S1_at11/111+29282530..29283860AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g50450Os.11717.1.S1_a_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.2.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.1.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50460Os.2019.1.S1_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50460Os.2019.2.S1_x_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50470Os.53943.1.S1_at11/111+29304966..29310713regulator of chromosome condensation, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20335.1.S1_at--681--5631Chr01:29283546..29283570 (25 bp)
GACACCTTTGTGAGCATTATTGGGC
LOC_Os01g50440
Os.20335.1.S1_at--981--6431Chr01:29283574..29283598 (25 bp)
GATCATGGACTTTACGAGCCTAATT
LOC_Os01g50440
Os.20335.1.S1_at--313--5871Chr01:29283589..29283613 (25 bp)
GAGCCTAATTTGATTTCACCGGTTT
LOC_Os01g50440
Os.20335.1.S1_at--209--4071Chr01:29283646..29283670 (25 bp)
CGAGGCGCTGTTTGTGCTTGTCTAC
LOC_Os01g50440
Os.20335.1.S1_at--572--10251Chr01:29283656..29283680 (25 bp)
TTTGTGCTTGTCTACGAATACGTGT
LOC_Os01g50440
Os.20335.1.S1_at--583--7471Chr01:29283707..29283731 (25 bp)
GTGTGTGACTAGCACTTCTTAGTAA
LOC_Os01g50440
Os.20335.1.S1_at--865--3131Chr01:29283730..29283754 (25 bp)
AATTCGTGTGCCGAATACTCGAACT
LOC_Os01g50440
Os.20335.1.S1_at--635--311Chr01:29283744..29283768 (25 bp)
ATACTCGAACTCCTGTGTGATTTGT
LOC_Os01g50440
Os.20335.1.S1_at--1060--311Chr01:29283792..29283816 (25 bp)
ATACTGTATTGATTTCGCCGTGTCT
LOC_Os01g50440
Os.20335.1.S1_at--952--4151Chr01:29283807..29283831 (25 bp)
CGCCGTGTCTGGTTAATCGATTTGA
LOC_Os01g50440
Os.20335.1.S1_at--993--10071Chr01:29283833..29283857 (25 bp)
TATGTGGACGTGATGGTTTACCTGT
LOC_Os01g50440
Target Sequence 
GACACCTTTGTGAGCATTATTGGGCATAGATCATGGACTTTACGAGCCTAATTTGATTTCACCGGTTTGTGAGATTAAGT
TCGACATGGATCAACCAGATCGAGGCGCTGTTTGTGCTTGTCTACGAATACGTGTGTGTGTGTGTGTGTGTGTTTTATGC
AGTGTGTGACTAGCACTTCTTAGTAATTCGTGTGCCGAATACTCGAACTCCTGTGTGATTTGTTGATTATTTGGATGCGT
TGATTTATACTGTATTGATTTCGCCGTGTCTGGTTAATCGATTTGATTATGTGGACGTGATGGTTTACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis