Browse Element(s) Details


Os.20378.1.S1_at

Description gb:AK071031.1
DB_XREF= gi:32981054
TID=Os.20378.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076I22, full insert sequence.
FL= gb:AK071031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28810OsAffx.27069.1.S1_at10/115+16806760..16807741hypothetical protein
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified
LOC_Os05g28830Os.20378.1.S1_at11/115+16816424..16818149expressed protein
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein
LOC_Os05g28850NANA5+16834133..16834536hypothetical protein
LOC_Os05g28860Os.54117.1.S1_at11/115+16837937..168440343'-5' exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20378.1.S1_at--235--7651Chr05:16816989..16817013 (25 bp)
GGGAGCACATGGACTTCGCGACGAC
LOC_Os05g28830
Os.20378.1.S1_at--611--1831Chr05:16816966..16816990 (25 bp)
ACGCGAGTCTTCTTCACGAGCATGT
LOC_Os05g28830
Os.20378.1.S1_at--158--5771Chr05:16816783..16816807 (25 bp)
GACGTGCCGGTGACGTTCCTGAACG
LOC_Os05g28830
Os.20378.1.S1_at--626--3851Chr05:16816765..16816789 (25 bp)
CTGAACGTGACGCAGCTGTCGCTGT
LOC_Os05g28830
Os.20378.1.S1_at--61--3311Chr05:16816726..16816750 (25 bp)
CACACGTCGGTGTACAAGAAGCAGT
LOC_Os05g28830
Os.20378.1.S1_at--1035--3831Chr05:16816627..16816651 (25 bp)
CTGCAGGACACGTGGAACGAGCTCC
LOC_Os05g28830
Os.20378.1.S1_at--48--1711Chr05:16816597..16816621 (25 bp)
ACCAAGCTCTTCTACCCTTGAAAAT
LOC_Os05g28830
Os.20378.1.S1_at--1099--732Chr05:16816523..16816547 (25 bp)
ATGTAATGTATGCATGCAGGCATGC
LOC_Os05g28830
Os.20378.1.S1_at--876--3471Chr05:16816507..16816531 (25 bp)
CAGGCATGCAGCTAGGCCGCGGCAT
LOC_Os05g28830
Os.20378.1.S1_at--1137--4511Chr05:16816492..16816516 (25 bp)
GCCGCGGCATCTAGCTAACATGGTT
LOC_Os05g28830
Os.20378.1.S1_at--469--9991Chr05:16816481..16816505 (25 bp)
TAGCTAACATGGTTCAATATTTCGG
LOC_Os05g28830
Target Sequence 
GGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGCATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGC
GGCGGCGAACCGGGGGGCNAACTGCTACGGNGAGACGGAGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGC
GCGGGGTGATGCNGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGACGTTCCTGAACGTGACGCAG
CTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCAGTGGACGCCGCCGACGCCGGAGCAGCTCGCCGA
CCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGC
TCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGC
ATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCAATATTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis