Browse Element(s) Details


Os.20462.1.S1_at

Description gb:BQ908766
DB_XREF= gi:22307544
DB_XREF=T015A06
CLONE=T015A06
TID=Os.20462.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.20462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vacuolar sorting receptor protein (OSJNBb0078C13.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2063011/11Vacuolar sorting receptor 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20600Os.38168.2.S1_x_at11/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.2.S1_at10/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.1.S1_at7/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18185.1.S1_s_at4/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18311.1.S1_at3/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38368.1.S1_s_at2/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20610Os.46813.2.S1_x_at11/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.1.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.2.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20619NANA10+10076232..10076576NA
LOC_Os10g20630Os.20462.1.S1_at11/1110+10079769..10087133Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os10g20640NANA10+10088174..10088437hypothetical protein
LOC_Os10g20650Os.46471.1.S1_at10/1110+10096322..10100533expressed protein
LOC_Os10g20660NANA10+10108177..10113353retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0006896biological_processGolgi to vacuole transport
GO:0005794cellular_componentGolgi apparatus
GO:0005802cellular_componentGolgi trans face
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
GO:0009940molecular_functionamino-terminal vacuolar sorting propeptide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20462.1.S1_at--889--7811Chr10:10080281..10080304 (24 bp)
GGTCATACATGGACTCTGAGATCAG
LOC_Os10g20630
Os.20462.1.S1_at--1087--2111Chr10:10080244..10080268 (25 bp)
ACAGTACATGCCACTGGACAGTCAA
LOC_Os10g20630
Os.20462.1.S1_at--620--10871Chr10:10080132..10080156 (25 bp)
TTGGCGTCACGGACAGACTGACACA
LOC_Os10g20630
Os.20462.1.S1_at--452--6031Chr10:10080088..10080112 (25 bp)
GAGATGCTTATCAGGTATACGGGAG
LOC_Os10g20630
Os.20462.1.S1_at--1004--7531Chr10:10080047..10080071 (25 bp)
GTGGCTTGATATTTGAAGTCCGTTA
LOC_Os10g20630
Os.20462.1.S1_at--425--6771Chr10:10080026..10080050 (25 bp)
GTTAAATCTGTTGTTCACCTGCTAA
LOC_Os10g20630
Os.20462.1.S1_at--1131--8531Chr10:10079995..10080019 (25 bp)
TGGAGCAGTTTCACCATACGTGCCA
LOC_Os10g20630
Os.20462.1.S1_at--1020--311Chr10:10079980..10080004 (25 bp)
ATACGTGCCACACTGCCACTGTTAG
LOC_Os10g20630
Os.20462.1.S1_at--330--4411Chr10:10079966..10079990 (25 bp)
GCCACTGTTAGCTCCATTTGTGGAA
LOC_Os10g20630
Os.20462.1.S1_at--411--6511Chr10:10079855..10079879 (25 bp)
GATATGCATCTGGTGCCACACGAAA
LOC_Os10g20630
Os.20462.1.S1_at--651--7791Chr10:10079844..10079868 (25 bp)
GGTGCCACACGAAAGACTGTTCAAA
LOC_Os10g20630
Target Sequence 
GGTCATACATGGACTCTGAGATCAGAGCAATCATNGCACAGTACATGCCACTGGACAGTCAAGGGGAGGTGCCAAATCAT
ACAAATGATGAAGAACACCATTAGCAAGAGTTTAGTTTACCTTTGCAAACCAAGGAACAGCAGGCCCCCTTGGCGTCACG
GACAGACTGACACATGCAGAAATGTGATGTTTTGAGATGCTTATCAGGTATACGGGAGTGATGTGGAGGTGAATGTGGCT
TGATATTTGAAGTCCGTTAAATCTGTTGTTCACCTGCTAATTTATGTGGAGCAGTTTCACCATACGTGCCACACTGCCAC
TGTTAGCTCCATTTGTGGAAGTGTACATTTGTAGGCTTTTGGTTGAGAAAGTATCCATAGAGTTTTTAGCTTATGAATGG
GGNCCATGTAATAGTAACCTATNTCCGATATGCATCTGGTGCCACACGAAAGACTGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis