Browse Element(s) Details


Os.46813.1.S1_at

Description gb:AK110474.1
DB_XREF= gi:32995683
TID=Os.46813.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative laccase (OSJNBa0045C13.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-H06, full insert sequence.
FL= gb:AK110474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2061010/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20570NANA10+10035111..10039348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.1.S1_x_at2/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20580Os.27691.2.S1_x_at1/1110+10039925..10041108retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20590OsAffx.30463.1.S1_at11/1110+10045464..10047228hypothetical protein
LOC_Os10g20600Os.38168.2.S1_x_at11/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.2.S1_at10/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38168.1.S1_at7/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18185.1.S1_s_at4/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600OsAffx.18311.1.S1_at3/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20600Os.38368.1.S1_s_at2/1110+10051564..10056847Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g20610Os.46813.2.S1_x_at11/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.1.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20610Os.46813.2.S1_at10/1110+10059502..10065242Multicopper oxidase family protein, expressed
LOC_Os10g20619NANA10+10076232..10076576NA
LOC_Os10g20630Os.20462.1.S1_at11/1110+10079769..10087133Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os10g20640NANA10+10088174..10088437hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46813.1.S1_at--344--9771Chr10:10060024..10060048 (25 bp)
TAATGCATTGCCACTTCGAATTCCA
LOC_Os10g20610
Os.46813.1.S1_at--150--91Chr10:10060005..10060029 (25 bp)
ATTCCATTTGTCGATGGGCATGGCT
LOC_Os10g20610
Os.46813.1.S1_at--187--5011Chr10:10059988..10060012 (25 bp)
GCATGGCTGCAGTGTTCATTGTAGA
LOC_Os10g20610
Os.46813.1.S1_at--531--3031Chr10:10059892..10059916 (25 bp)
AATCTCCTCTCCTGCGAAATTAATT
LOC_Os10g20610
Os.46813.1.S1_at--775--131Chr10:10059874..10059898 (25 bp)
ATTAATTCTTACCTCCAAGTCTCAG
LOC_Os10g20610
Os.46813.1.S1_at--123--3231Chr10:10059859..10059883 (25 bp)
CAAGTCTCAGGAGGCATGTACCTAA
LOC_Os10g20610
Os.46813.1.S1_at--778--9691NONE
TCACATGTATGTTTTCTTCGAGGCA
NONE
Os.46813.1.S1_at--637--7851Chr10:10059669..10059693 (25 bp)
GGTAGTACGCACATTTATTCATAGA
LOC_Os10g20610
Os.46813.1.S1_at--391--10171Chr10:10059599..10059623 (25 bp)
TATAAGTCCACAGGGTGTGCGCGCC
LOC_Os10g20610
Os.46813.1.S1_at--1124--7451Chr10:10059585..10059609 (25 bp)
GTGTGCGCGCCTTTTTAATAGTGAG
LOC_Os10g20610
Os.46813.1.S1_at--221--1111Chr10:10059566..10059590 (25 bp)
AGTGAGTACGCATGCAGTTACACAT
LOC_Os10g20610
Target Sequence 
TAATGCATTGCCACTTCGAATTCCATTTGTCGATGGGCATGGCTGCAGTGTTCATTGTAGAGGATGGGCCAACAGTGGAT
ACATCTCTCCCCCCACCACCGGAAGATTTCTAGGACGGAAGGCCATGAAGAGAATCTCCTCTCCTGCGAAATTAATTCTT
ACCTCCAAGTCTCAGGAGGCATGTACCTAAAAATATAATTTTCCACCGTTAATAGTTTTCGAATAAACTAGATAAACTAA
TGAATCACATGTATGTTTTCTTCGAGGCAAAATGTATCTGTGTGAATTTCATATATCTTTCCTAAACATTAATTGATTAG
GCTGTTATGCCAAAAAGATCTCTATCAACAAATAAGGTAGTACGCACATTTATTCATAGAGATAGGTGTGTGTTTATATG
TTTCGATTTATCACAATCATAAGACTATAAGTCCACAGGGTGTGCGCGCCTTTTTAATAGTGAGTACGCATGCAGTTACA
CAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis