Browse Element(s) Details


Os.20645.1.S1_at

Description gb:AK102401.1
DB_XREF= gi:32987610
TID=Os.20645.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092J15, full insert sequence.
FL= gb:AK102401.1 gb:AK060217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1011010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10080OsAffx.20877.1.S1_at1/117+5389861..5397679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10080Os.45173.1.S1_x_at1/117+5389861..5397679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10090OsAffx.28376.1.S1_at11/117+5404153..5407056hypothetical protein
LOC_Os07g10100NANA7+5409201..5411279retrotransposon protein, putative, unclassified
LOC_Os07g10110Os.20645.1.S1_at10/117+5417068..5424872expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_s_at11/117+5429853..5434447expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_at11/117+5429853..5434447expressed protein
LOC_Os07g10130Os.22578.1.A1_at9/117+5438657..5444128Squalene synthetase, putative, expressed
LOC_Os07g10140NANA7+5448232..5448630hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20645.1.S1_at--605--1031Chr07:5419620..5419644 (25 bp)
AGGTCGATTCTTGTCTAGGCACGTC
LOC_Os07g10110
Os.20645.1.S1_at--196--10071Chr07:5419605..5419629 (25 bp)
TAGGCACGTCCATCAAGTCATATTG
LOC_Os07g10110
Os.20645.1.S1_at--866--8511NONE
TGGAATGAACCCTGACAGTGTCCTC
NONE
Os.20645.1.S1_at--1082--6831Chr07:5417501..5417525 (25 bp)
GTTTCTCAGGAGGTTGTCAGCATGA
LOC_Os07g10110
Os.20645.1.S1_at--862--9551Chr07:5417304..5417328 (25 bp)
TCTTTTTCTCCCACATTTCTCAGTT
LOC_Os07g10110
Os.20645.1.S1_at--332--9571Chr07:5417253..5417277 (25 bp)
TCATTTCCTTCTGTTGTGCTAGTAC
LOC_Os07g10110
Os.20645.1.S1_at--440--5211Chr07:5417192..5417216 (25 bp)
GAATTATTTTCTTCCCTGAGCTAAG
LOC_Os07g10110
Os.20645.1.S1_at--1090--5891Chr07:5417175..5417199 (25 bp)
GAGCTAAGGCCTGTAAGTGTTGCTT
LOC_Os07g10110
Os.20645.1.S1_at--647--1111Chr07:5417160..5417184 (25 bp)
AGTGTTGCTTACTTGCATGGCCAGT
LOC_Os07g10110
Os.20645.1.S1_at--1119--871Chr07:5417144..5417168 (25 bp)
ATGGCCAGTATATGTCGCGAGCTTT
LOC_Os07g10110
Os.20645.1.S1_at--958--4611Chr07:5417128..5417152 (25 bp)
GCGAGCTTTGTATCATTCTTTCAGA
LOC_Os07g10110
Target Sequence 
AGGTCGATTCTTGTCTAGGCACGTCCATCAAGTCATATTGGATATTATTGATAGAGCAATGGCTGCATTTTCAGCTACTG
GAATGAACCCTGACAGTGTCCTCCCGGGTGACGATTGGTTCATGGATGTTTCTCAGGAGGTTGTCAGCATGATTAGTGGA
AAGGGTAGAGCTGCCAATGGAGACAGGGAGATAAACAGCCCTACTGCCTCANTCTCAGCGCATTCCATGTCATCTTTCAG
ATCCCATGGCAGCTCCTAGCTTGTAAGCTATACTTTTTGTAGGCAGATCATCATTGTATAATAAGCAATAGTGCATTCTT
TCTTTCTTTTTCTCCCACATTTCTCAGTTTTCTCTGTCTATTTCTTTTGTTCTATTCATTTCCTTCTGTTGTGCTAGTAC
AGGTGGATAACTGTTTGACGTAGGAAAAAAAATCTTGAATTATTTTCTTCCCTGAGCTAAGGCCTGTAAGTGTTGCTTAC
TTGCATGGCCAGTATATGTCGCGAGCTTTGTATCATTCTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis