Browse Element(s) Details


Os.207.1.S1_at

Description gb:AK059596.1
DB_XREF= gi:32969614
TID=Os.207.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D11, full insert sequence.
FL= gb:AK059596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1690010/113-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16880NANA1+9641271..9650270expressed protein
LOC_Os01g16890Os.206.1.S1_at11/111+9654761..965805760S ribosomal protein L30, putative, expressed
LOC_Os01g16900Os.207.1.S1_at10/111+9662198..96669783-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g16910Os.43682.1.S1_at11/111+9667878..9672525mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004449molecular_functionisocitrate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.207.1.S1_at--388--8011NONE
GGAGGCTTGGGCTTGACACCCAGCT
NONE
Os.207.1.S1_at--510--2171Chr01:9665942..9665963 (22 bp)
ACACCCAGCTGCAACATTGGTGAAG
LOC_Os01g16900
Os.207.1.S1_at--655--2891Chr01:9665961..9665985 (25 bp)
AAGGTGGCATTTGTCTGGCAGAAGC
LOC_Os01g16900
Os.207.1.S1_at--242--9451Chr01:9665974..9665998 (25 bp)
TCTGGCAGAAGCTGTTCACGGTTCT
LOC_Os01g16900
Os.207.1.S1_at--976--1911Chr01:9665991..9666015 (25 bp)
ACGGTTCTGCTCCTGATATTGCTGG
LOC_Os01g16900
Os.207.1.S1_at--986--4691Chr01:9666011..9666420 (25 bp)
GCTGGCAAGAACCTTGCAAACCCGA
LOC_Os01g16900
Os.207.1.S1_at--664--2371Chr01:9666413..9666437 (25 bp)
AAACCCGACCGCTCTTATGCTGAGT
LOC_Os01g16900
Os.207.1.S1_at--990--4731Chr01:9666438..9666462 (25 bp)
GCTGTTATGATGTTGCGCCACTTGC
LOC_Os01g16900
Os.207.1.S1_at--359--6291Chr01:9666446..9666470 (25 bp)
GATGTTGCGCCACTTGCAATTCAAT
LOC_Os01g16900
Os.207.1.S1_at--1012--5191Chr01:9666461..9666485 (25 bp)
GCAATTCAATAACCAAGCAGACCGG
LOC_Os01g16900
Os.207.1.S1_at--547--2711Chr01:9666475..9666499 (25 bp)
AAGCAGACCGGATCCACAACGCCAT
LOC_Os01g16900
Target Sequence 
GGAGGCTTGGGCTTGACACCCAGCTGCAACATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCACGGTTCTGCTCC
TGATATTGCTGGCAAGAACCTTGCAAACCCGACCGCTCTTATGCTGAGTGCTGTTATGATGTTGCGCCACTTGCAATTCA
ATAACCAAGCAGACCGGATCCACAACGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis