Browse Element(s) Details


Os.43682.1.S1_at

Description gb:CA923293
DB_XREF= gi:27410223
DB_XREF=SSHD66
TID=Os.43682.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1691011/11mitochondrial import receptor subunit TOM40 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16880NANA1+9641271..9650270expressed protein
LOC_Os01g16890Os.206.1.S1_at11/111+9654761..965805760S ribosomal protein L30, putative, expressed
LOC_Os01g16900Os.207.1.S1_at10/111+9662198..96669783-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g16910Os.43682.1.S1_at11/111+9667878..9672525mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005742cellular_componentmitochondrial outer membrane translocase complex
GO:0005743cellular_componentmitochondrial inner membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43682.1.S1_at--924--8691Chr01:9672030..9672054 (25 bp)
TGTGCGCCTCAGTGTGTCCATGGGA
LOC_Os01g16910
Os.43682.1.S1_at--325--7571Chr01:9671983..9672007 (25 bp)
GGGCGGATGTGATCAAGGTCCCCAC
LOC_Os01g16910
Os.43682.1.S1_at--448--10611Chr01:9671945..9671969 (25 bp)
TTCGGCGCAAACTTTATGGATCCCA
LOC_Os01g16910
Os.43682.1.S1_at--612--2791Chr01:9671622..9671645 (24 bp)
AAGTTGACGAACGAGCCCCATTACT
LOC_Os01g16910
Os.43682.1.S1_at--34--4331Chr01:9671605..9671629 (25 bp)
CCATTACTCCCAAGGCATGTTTAGC
LOC_Os01g16910
Os.43682.1.S1_at--235--7431Chr01:9669770..9669794 (25 bp)
GTGTAACTAAGAACCTCTCCTTGGG
LOC_Os01g16910
Os.43682.1.S1_at--847--1971Chr01:9669744..9669768 (25 bp)
ACTGAAGCTTTCTGGCTTGGGCAAC
LOC_Os01g16910
Os.43682.1.S1_at--1103--6591Chr01:9669705..9669729 (25 bp)
GTTGGCTTTGTTGCTCGATATGACA
LOC_Os01g16910
Os.43682.1.S1_at--363--8591Chr01:9668749..9668772 (24 bp)
TGGTTTCCCTTGCATCTGATTTTAT
LOC_Os01g16910
Os.43682.1.S1_at--63--6491Chr01:9668421..9668445 (25 bp)
GATACCAATGGCGTTGTTTCTGCTC
LOC_Os01g16910
Os.43682.1.S1_at--1113--5211Chr01:9668371..9668392 (22 bp)
GAATTTCGTTCTTTCTGCAGAGCTT
LOC_Os01g16910
Target Sequence 
TGTGCGCCTCAGTGTGTCCATGGGATCCATGGAGCTCCCATCGCAGGGGGCGGATGTGATCAAGGTCCCCACCTCCAACT
ACGAGTTCGGCGCAAACTTTATGGATCCCAAGTTGACGAACGAGCCCCATTACTCCCAAGGCATGTTTAGCTTTGATTAT
AAGGGCAAAGATTTTAGATCACAGTTCCAACTTGGGAATAATGCCTTCTATGGAGGGAACTACATCCAGAGTGTAACTAA
GAACCTCTCCTTGGGAACTGAAGCTTTCTGGCTTGGGCAACAAAGAAAATCAGGAGTTGGCTTTGTTGCTCGATATGACA
CAAAGAAAATGGTTTCCCTTGCATCTGATTTTATGTACAATCATATGGCGAAGGATGTAACAGCAAGTTTCGGCTATGAT
TATATGTTGAGACAGTGTCGTCTGAGGGGGAAGATTGATACCAATGGCGTTGTTTCTGCTCTTTTGGAGGAGCGGTTGAC
CCNCGGCGTGAATTTCGTTCTTTCTGCAGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis