Browse Element(s) Details


Os.20826.1.S1_at

Description gb:AK100757.1
DB_XREF= gi:32985966
TID=Os.20826.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118P13, full insert sequence.
FL= gb:AK100757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4686011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46810Os.47380.1.S1_at11/114+27520967..27521716Cortical cell delineating protein precursor, putative, expressed
LOC_Os04g46820NANA4+27524246..27524641Cortical cell delineating protein precursor, putative
LOC_Os04g46830OsAffx.26492.1.S1_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46830OsAffx.26492.1.S1_s_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46840OsAffx.4109.1.S1_at11/114+27536212..27537433hypothetical protein
LOC_Os04g46850OsAffx.26493.1.S1_at11/114+27540099..27540606hypothetical protein
LOC_Os04g46860Os.20826.1.S1_at11/114+27545574..27548230GRAS family transcription factor containing protein, expressed
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein
LOC_Os04g46880Os.17299.1.S1_at10/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46880Os.6231.1.S1_at1/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20826.1.S1_at--942--10551Chr04:27547694..27547718 (25 bp)
TTCTTGGGCGGCGTAGAGCTGACAA
LOC_Os04g46860
Os.20826.1.S1_at--1093--6371Chr04:27547722..27547746 (25 bp)
GATCGCTTGGCGGACAGTGCTAACA
LOC_Os04g46860
Os.20826.1.S1_at--300--2511Chr04:27547743..27547767 (25 bp)
AACATCAGCAGGGTTTGCACCTCAA
LOC_Os04g46860
Os.20826.1.S1_at--512--5411Chr04:27547842..27547866 (25 bp)
GAAGCGTGGAGCAGGCCTTGCACTC
LOC_Os04g46860
Os.20826.1.S1_at--991--10731Chr04:27547859..27547883 (25 bp)
TTGCACTCTATTGGCAGCGTGGCGA
LOC_Os04g46860
Os.20826.1.S1_at--621--10791Chr04:27547886..27547910 (25 bp)
TTGTATCCGTCTCAGCATGGCGATG
LOC_Os04g46860
Os.20826.1.S1_at--461--10271Chr04:27547950..27547974 (25 bp)
TTTGCAGGCATGTTTAACTCCAGTA
LOC_Os04g46860
Os.20826.1.S1_at--649--411Chr04:27548019..27548043 (25 bp)
ATCATGGTTGTTGCACACTCTGTTG
LOC_Os04g46860
Os.20826.1.S1_at--1162--7451Chr04:27548096..27548120 (25 bp)
GTGTGTGACCAGTGGCTATGGCCTC
LOC_Os04g46860
Os.20826.1.S1_at--875--871Chr04:27548113..27548137 (25 bp)
ATGGCCTCTAGGGTCTTACCACTAT
LOC_Os04g46860
Os.20826.1.S1_at--574--3171Chr04:27548155..27548179 (25 bp)
AATTGGCCACTTCATGTTCTTGGAA
LOC_Os04g46860
Target Sequence 
TTCTTGGGCGGCGTAGAGCTGACAAAGCGATCGCTTGGCGGACAGTGCTAACATCAGCAGGGTTTGCACCTCAACCACTC
AGCAACCTTGCGGAGGCACAGGCTGACTGCCTCTTGAAGCGGGTGCAGGTCCGAGGCTTCCATGTGGAGAAGCGTGGAGC
AGGCCTTGCACTCTATTGGCAGCGTGGCGAGCTTGTATCCGTCTCAGCATGGCGATGCTGATCACACCTGCCTCGACCAT
CATGATTCCTACACCATTTGCAGGCATGTTTAACTCCAGTAATATGAATTTTGTCTTGCAATTTAAACATTGCAANAGAA
ATTATTATCATGGTTGTTGCACACTCTGTTGTTTATTAGGTAGGCCTAATGGATTTGGCAATCTTGGTATGAGTGTCTCT
GTAGTGTGTGACCAGTGGCTATGGCCTCTAGGGTCTTACCACTATGTTNTTGCTCTCCGCTCAATTGGCCACTTCATGTT
CTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis