Browse Element(s) Details


Os.5991.1.S1_at

Description gb:AK066109.1
DB_XREF= gi:32976127
TID=Os.5991.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052N06, full insert sequence.
FL= gb:AK101071.1 gb:AK066109.1 gb:AK120749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4689011/11snoRNA binding domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46860Os.20826.1.S1_at11/114+27545574..27548230GRAS family transcription factor containing protein, expressed
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein
LOC_Os04g46880Os.17299.1.S1_at10/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46880Os.6231.1.S1_at1/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5991.1.S1_at--296--8311Chr04:27575766..27575790 (25 bp)
GGCTGACTTCTAGTTTGGCGTTTAC
LOC_Os04g46890
Os.5991.1.S1_at--72--1351Chr04:27576247..27576271 (25 bp)
AGAGTTGTCAAATCCACAGGCCCAC
LOC_Os04g46890
Os.5991.1.S1_at--830--1931Chr04:27576270..27576294 (25 bp)
ACGGCAACCTGCTTGGAAGTGGAAC
LOC_Os04g46890
Os.5991.1.S1_at--1132--5931Chr04:27576298..27576322 (25 bp)
GAGCACCTATTTTTCAGAGACCGGG
LOC_Os04g46890
Os.5991.1.S1_at--10--1491Chr04:27576357..27576381 (25 bp)
AGCAAAAGTTTCTTCTTCCCATCAG
LOC_Os04g46890
Os.5991.1.S1_at--1087--9751Chr04:27576397..27576421 (25 bp)
TAATCCTCAGGATGCACCGATGAAT
LOC_Os04g46890
Os.5991.1.S1_at--432--10811Chr04:27576427..27576451 (25 bp)
TTGTAATGTACTCCACCTTATACCC
LOC_Os04g46890
Os.5991.1.S1_at--5--3431Chr04:27576460..27576484 (25 bp)
CAGACTTTCGTGGTGCTGTTTGCAA
LOC_Os04g46890
Os.5991.1.S1_at--238--5671Chr04:27576527..27576551 (25 bp)
GACATGCTGCGTTTGATCTGATGCC
LOC_Os04g46890
Os.5991.1.S1_at--973--8851Chr04:27576545..27576569 (25 bp)
TGATGCCGTCTTTGCGTTCAACACA
LOC_Os04g46890
Os.5991.1.S1_at--1159--7431Chr04:27576620..27576644 (25 bp)
GTGTAATCCCTCTTGTTTCTTACAA
LOC_Os04g46890
Target Sequence 
GGCTGACTTCTAGTTTGGCGTTTACACCAGTTCAGGGGATAGAGTTGTCAAATCCACAGGCCCACGGCAACCTGCTTGGA
AGTGGAACTCAGAGCACCTATTTTTCAGAGACCGGGACGTTCTCGAAGATCAAAAGGACCTGAGCTGATAAGCAAAAGTT
TCTTCTTCCCATCAGCCCACAGACCCGTCATAATCCTCAGGATGCACCGATGAATCCATTTTGTAATGTACTCCACCTTA
TACCCGAATTCAGCAGACTTTCGTGGTGCTGTTTGCAATCTCTAGAAGTTCGCTAACTTCCATACGGNTNAAGTTAATTC
GACATGCTGCGTTTGATCTGATGCCGTCTTTGCGTTCAACACAATTTACTGTTTTTGGTAGGTGATTATCTTATCTGTCA
TCTCATCTTTAAAGTGTAATCCCTCTTGTTTCTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis