Browse Element(s) Details


Os.14811.1.S1_at

Description gb:AK108782.1
DB_XREF= gi:32993991
TID=Os.14811.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A06, full insert sequence.
FL= gb:AK108782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4690011/11Beige/BEACH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein
LOC_Os04g46880Os.17299.1.S1_at10/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46880Os.6231.1.S1_at1/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14811.1.S1_at--478--6431Chr04:27577175..27577199 (25 bp)
GATCATTTTCTGTTCGTGTTAGCAT
LOC_Os04g46900
Os.14811.1.S1_at--1096--511Chr04:27577145..27577169 (25 bp)
ATCGATGGCTCGAGATGTACTATCT
LOC_Os04g46900
Os.14811.1.S1_at--212--971Chr04:27577100..27577124 (25 bp)
AGGACCTGCGAGTTAGGCTGAGCAA
LOC_Os04g46900
Os.14811.1.S1_at--536--1031Chr04:27577070..27577094 (25 bp)
AGGTCGTACACCATATCCAGCAGAT
LOC_Os04g46900
Os.14811.1.S1_at--199--4091Chr04:27577017..27577041 (25 bp)
CGAACTTTATCGAGTAGCCCTGTAA
LOC_Os04g46900
Os.14811.1.S1_at--652--6071Chr04:27577006..27577030 (25 bp)
GAGTAGCCCTGTAAAAATCCCGATG
LOC_Os04g46900
Os.14811.1.S1_at--252--3591Chr04:27576923..27576947 (25 bp)
CATTTTTGGTTGCTCGGTTCAGACA
LOC_Os04g46900
Os.14811.1.S1_at--145--10611Chr04:27576895..27576919 (25 bp)
TTCTGTCTTACAATTCTCTGTAGGG
LOC_Os04g46900
Os.14811.1.S1_at--268--8991Chr04:27576870..27576894 (25 bp)
TGAACCAGTGTGAGCAACCCCATTT
LOC_Os04g46900
Os.14811.1.S1_at--247--7891Chr04:27576782..27576806 (25 bp)
GGTTATGCTGAGACTATTCGCCGTT
LOC_Os04g46900
Os.14811.1.S1_at--765--2031Chr04:27576770..27576794 (25 bp)
ACTATTCGCCGTTAATTGGTCAAAG
LOC_Os04g46900
Target Sequence 
GATCATTTTCTGTTCGTGTTAGCATAATGAATCGATGGCTCGAGATGTACTATCTGTACAAAGTGGATAAGTAATAGGAC
CTGCGAGTTAGGCTGAGCAAAGGCTAGGTCGTACACCATATCCAGCAGATCATATTATTCAGCGAACTGCTGAGTAAACG
AACTTTATCGAGTAGCCCTGTAAAAATCCCGATGGTTTTTCTTTTTGTAGAATGGGTGAATAGTCATTTTACATTGTTTG
CAGCGTNGTANCCATTTTTGGTTGCTCGGTTCAGACAGTTTTCTGTCTTACAATTCTCTGTAGGGTGAACCAGTGTGAGC
AACCCCATTTTTGTACATGTAAATTTTGGCATTTGGCTATGTTTTGAGTATACGGATGCAACCATCACATANGAGGTTAT
GCTGAGACTATTCGCCGTTAATTGGTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis