Browse Element(s) Details


Os.11255.1.S1_at

Description gb:AY100689.1
DB_XREF= gi:21360379
GEN=GPX1
TID=Os.11255.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.11255 (NCBI UniGene Cluster)
DEF=Oryza sativa glutathione peroxidase 1 (GPX1) mRNA, complete cds.
PROD=glutathione peroxidase 1
FL= gb:AK062772.1 gb:AK058931.1 gb:AY100689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4696010/11phospholipid hydroperoxide glutathione peroxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein
LOC_Os04g47010Os.51863.1.S1_at8/114+27644991..27647491expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004602molecular_functionglutathione peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11255.1.S1_at--928--7211NONE
GTCGCATCCCAATGTGGCTTAACTA
NONE
Os.11255.1.S1_at--1129--8271Chr04:27620605..27620629 (25 bp)
GGCTTAACTAACTCCAACTACACTG
LOC_Os04g46960
Os.11255.1.S1_at--170--10771Chr04:27620887..27620911 (25 bp)
TTGAGATATTGGCTTTCCCGTGCAA
LOC_Os04g46960
Os.11255.1.S1_at--273--2951Chr04:27620976..27621000 (25 bp)
AAGGCTGAGTATCCCATTTTTGACA
LOC_Os04g46960
Os.11255.1.S1_at--1050--3831Chr04:27621161..27621185 (25 bp)
CTGCACCCCTGTACAAGTATCTGAA
LOC_Os04g46960
Os.11255.1.S1_at--111--7491Chr04:27621197..27621221 (25 bp)
GTGGGCTTTTCGGTGATAGCATCAA
LOC_Os04g46960
Os.11255.1.S1_at--257--3371Chr04:27621285..27621306 (22 bp)
CACCTCCCCTCTTAGTATTGAGAAG
LOC_Os04g46960
Os.11255.1.S1_at--329--4771Chr04:27621408..27621432 (25 bp)
GCTGCTTGGGAGCTCTTAAACCTAA
LOC_Os04g46960
Os.11255.1.S1_at--687--5951Chr04:27621448..27621472 (25 bp)
GAGCAACCTGCACTTATGCACTGTA
LOC_Os04g46960
Os.11255.1.S1_at--1070--7011Chr04:27621510..27621534 (25 bp)
GTACTTCACAGGTTGCATTTGCACT
LOC_Os04g46960
Os.11255.1.S1_at--603--9911Chr04:27621536..27621560 (25 bp)
TACTCCTTGCATCCTGAATCTTTAT
LOC_Os04g46960
Target Sequence 
GTCGCATCCCAATGTGGCTTAACTAACTCCAACTACACTGAGCTGAGCCAGCTGTATGAGAAGTACAAGGTCCAAGGCTT
TGAGATATTGGCTTTCCCGTGCAATCAGTTTGGAGGGCAGGAACCCGGCTCCAATGAGGAGATTGTCCAGTTTGCTTGCA
CTCGCTTCAAGGCTGAGTATCCCATTTTTGACAAGGTTGATGTCAACGGTAACAATGCTGCACCCCTGTACAAGTATCTG
AAGTCTAACAAAGGTGGGCTTTTCGGTGATAGCATCAAGTGGAACTTCTCCAAATTCTTGGTTGACAAGGAGGGTCGCGT
GGTGGATCGCTATGCGCCCACCACCTCCCCTCTTAGTATTGAGAAGGATATCAAGAAGCTGCTTGGGAGCTCTTAAACCT
AAAGGTCGGGATCTGTAGAGCAACCTGCACTTATGCACTGTATTCAGCACTGAGAGTTGTATTAATAAATTGGTGACATG
TACTTCACAGGTTGCATTTGCACTATACTCCTTGCATCCTGAATCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis