Browse Element(s) Details


Os.53972.1.S1_at

Description gb:AK101107.1
DB_XREF= gi:32986316
TID=Os.53972.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025D23, full insert sequence.
FL= gb:AK101107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4697010/11Cis-zeatin O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein
LOC_Os04g47010Os.51863.1.S1_at8/114+27644991..27647491expressed protein
LOC_Os04g47020Os.11569.1.S1_at11/114+27648990..27651276genetic modifier, putative, expressed
LOC_Os04g47030NANA4+27652055..27654368hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53972.1.S1_at--788--272Chr01:5571096..5571116 (21 bp)
ATATGGTATCGGTTATATCCGGCGG
NONE
Os.53972.1.S1_at--759--6456Chr09:18858650..18858673 (24 bp)
GATAATCCGAATTTCACAGCCCATG
NONE
Os.53972.1.S1_at--287--751NONE
ATGTAACCTCTCAATTTGGCCCATT
NONE
Os.53972.1.S1_at--588--10872Chr04:27624582..27624606 (25 bp)
TTGGCCCATTTGACACGAGCATTTT
LOC_Os04g46970
Os.53972.1.S1_at--71--511Chr04:27624556..27624580 (25 bp)
ATCGTGTAAACATTCAGCCCATCCA
LOC_Os04g46970
Os.53972.1.S1_at--511--4353Chr03:29474484..29474504 (21 bp)
CCACCTTATCCATCAATCTATCTAG
NONE
Os.53972.1.S1_at--157--3691Chr04:27624511..27624535 (25 bp)
CTATCTAGGAGTTCAGTCCGTGACT
LOC_Os04g46970
Os.53972.1.S1_at--686--8351Chr04:27624481..27624505 (25 bp)
GGCGTCGTGTCAACCAATTTTTTCA
LOC_Os04g46970
Os.53972.1.S1_at--60--5092Chr01:5571501..5571525 (25 bp)
GCACCAACTCTGTCGTATGTGTTAT
NONE
Os.53972.1.S1_at--318--2852Chr01:5571537..5571561 (25 bp)
AAGTCTACTTCTCTAGATCATCTCC
NONE
Os.53972.1.S1_at--347--9252Chr01:5571559..5571583 (25 bp)
TCCTTCTGACCTTAGCTGCATATGT
NONE
Target Sequence 
ATATGGTATCGGTTATATCCGGCGGATATGGATTATCCGCTATTTTAAGCGGATTATCCGATAAACGTTTTGGCGGATAA
TCCGAATTTCACAGCCCATGTAACCTCTCAATTTGGCCCATTTGACACGAGCATTTTCATCGTGTAAACATTCAGCCCAT
CCACGTCCACCTTATCCATCAATCTATCTAGGAGTTCAGTCCGTGACTCCGTCGGCGTCGTGTCAACCAATTTTTTCATC
GAGACTTCTCTTCTTCCATTCCTCCCACGCCGCCGCCTGACTTCTCCACCCAGCGCCACCGCCGCCACCTGCCTTCTCCA
CCCCGGCGCCGCGGCCTACCTTCTCCACCCCAAAGTCACCTGGTTGTCTCCGTCTCGGCGCCGGCGACGCCTCCTGCCAT
CTCCAGCACCAACTCTGTCGTATGTGTTATTATCAGAATTGAAGTCTACTTCTCTAGATCATCTCCTTCTGACCTTAGCT
GCATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis