Browse Element(s) Details


OsAffx.26495.1.S1_at

Description tigr:9632.m04533
TID=OsAffx.26495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4700011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein
LOC_Os04g47010Os.51863.1.S1_at8/114+27644991..27647491expressed protein
LOC_Os04g47020Os.11569.1.S1_at11/114+27648990..27651276genetic modifier, putative, expressed
LOC_Os04g47030NANA4+27652055..27654368hypothetical protein
LOC_Os04g47040Os.49810.1.S1_at11/114+27662061..27671679Anthocyanin regulatory Lc protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26495.1.S1_at--318--4131Chr04:27640776..27640800 (25 bp)
CGCAGGCGCGGCCATTCAACAACGT
LOC_Os04g47000
OsAffx.26495.1.S1_at--12--9591Chr04:27640709..27640733 (25 bp)
TACTAACTCCGGCAACTCCTTTGAT
LOC_Os04g47000
OsAffx.26495.1.S1_at--826--5151Chr04:27640698..27640722 (25 bp)
GCAACTCCTTTGATCGGACACTGGT
LOC_Os04g47000
OsAffx.26495.1.S1_at--153--8151Chr04:27640683..27640707 (25 bp)
GGACACTGGTGATGCGACGACCGCC
LOC_Os04g47000
OsAffx.26495.1.S1_at--379--10651Chr04:27640570..27640594 (25 bp)
TTCCGCCAACGACGTATCGATCAGG
LOC_Os04g47000
OsAffx.26495.1.S1_at--106--9291Chr04:27640471..27640495 (25 bp)
TCCGACGCAGTACGGTGCAACGATG
LOC_Os04g47000
OsAffx.26495.1.S1_at--213--2671Chr04:27640438..27640462 (25 bp)
AAGCGTTCCGCGGAGGTGGCAACTA
LOC_Os04g47000
OsAffx.26495.1.S1_at--594--7231Chr04:27640388..27640412 (25 bp)
GTCCGCAGAAGGCAACGATCGTCAA
LOC_Os04g47000
OsAffx.26495.1.S1_at--711--2571Chr04:27640210..27640399 (25 bp)
AACGATCGTCAACTTGTTGCTAAAA
LOC_Os04g47000
OsAffx.26495.1.S1_at--586--3931Chr04:27640035..27640059 (25 bp)
CGGCGGTGCTCGATGGTGACTTCAA
LOC_Os04g47000
OsAffx.26495.1.S1_at--1139--7931Chr04:27640010..27640034 (25 bp)
GGATAACAATGGTTGCCACCACCAC
LOC_Os04g47000
Target Sequence 
CGCAGGCGCGGCCATTCAACAACGTCCCTCCGACGCCATTGCGTCCTCGCCCGGCAACGGCAGCGCCTACTAACTCCGGC
AACTCCTTTGATCGGACACTGGTGATGCGACGACCGCCGTCGCCGTCCGTCGTCCAGCCACGGCCCGCGCAGGAGACGCC
CGAGATGCACGCGAGGCGTGTGCTTTGGCAGCTCGTGAAGGAGCTCTTCCGCCAACGACGTATCGATCAGGCTCAAGCCG
CTGCTGCAGCTGAGCAAGAACGGCTGATGATGACGCCGCCGGCGCAGGCGCCGCAGCAGCCGTGCTCCGACGCAGTACGG
TGCAACGATGATGGCGAGAAGCGTTCCGCGGAGGTGGCAACTACGGAGGTGGCGCCGGATGGGAGCGCGTCCGCAGAAGG
CAACGATCGTCAACTTGTTGCTAAAATTGAAGTTGGGATGGAGGTGGAGGCTGCGGCGGCGGTGATGGTGAAGGGGACGG
ATCCAGTGGCGGCGGTGCTCGATGGTGACTTCAAGGATAACAATGGTTGCCACCACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis