Browse Element(s) Details


Os.11569.1.S1_at

Description gb:AK067832.1
DB_XREF= gi:32977850
TID=Os.11569.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121O07, full insert sequence.
FL= gb:AK067832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4702011/11genetic modifier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein
LOC_Os04g47010Os.51863.1.S1_at8/114+27644991..27647491expressed protein
LOC_Os04g47020Os.11569.1.S1_at11/114+27648990..27651276genetic modifier, putative, expressed
LOC_Os04g47030NANA4+27652055..27654368hypothetical protein
LOC_Os04g47040Os.49810.1.S1_at11/114+27662061..27671679Anthocyanin regulatory Lc protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11569.1.S1_at--703--6511Chr04:27650685..27650709 (25 bp)
GATTTCTGCCGAGGGAAACCCGAGG
LOC_Os04g47020
Os.11569.1.S1_at--639--10851Chr04:27650740..27650764 (25 bp)
TTGGTCTTGAGCCTGATGTTTGTCT
LOC_Os04g47020
Os.11569.1.S1_at--976--6851Chr04:27650757..27650781 (25 bp)
GTTTGTCTTGTGCTGGGTAACTCAA
LOC_Os04g47020
Os.11569.1.S1_at--879--2551Chr04:27650794..27650818 (25 bp)
AATCTGCGCATACTGCTGGGATGAG
LOC_Os04g47020
Os.11569.1.S1_at--101--5911Chr04:27650853..27650877 (25 bp)
GAGCTCCAAGCAGCAAACCATGTTG
LOC_Os04g47020
Os.11569.1.S1_at--197--10151Chr04:27650896..27650920 (25 bp)
TATCTGTCGCTGACCTGCAAAGGAT
LOC_Os04g47020
Os.11569.1.S1_at--210--7751Chr04:27651015..27651039 (25 bp)
GGTGTGCTAATATTGCCCTATGTAT
LOC_Os04g47020
Os.11569.1.S1_at--1158--231Chr04:27651038..27651062 (25 bp)
ATATAGCTCCAATTGCAACCTAGGT
LOC_Os04g47020
Os.11569.1.S1_at--600--10871Chr04:27651102..27651126 (25 bp)
TTGGCCGTTAGCTTGTTAACTGCTT
LOC_Os04g47020
Os.11569.1.S1_at--467--6971Chr04:27651157..27651181 (25 bp)
GTAGCCTAGATGCTTTCGATCTCTA
LOC_Os04g47020
Os.11569.1.S1_at--503--10411Chr04:27651253..27651276 (24 bp)
TTATTATGCCTTGTATTTTGTTCCG
LOC_Os04g47020
Target Sequence 
GATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCNCAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCT
TGTGCTGGGTAACTCAAATTCGACAATANAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACC
CTGCCTNTGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCC
AATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTT
CTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACA
GATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTA
GATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCNATGTAATATATAATT
TATATAGATTATTATGCCTTGTATTTTGTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis