Browse Element(s) Details


Os.23440.1.A1_at

Description gb:AK069329.1
DB_XREF= gi:32979353
TID=Os.23440.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full insert sequence.
FL= gb:AK069329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4691011/11Actin-depolymerizing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23440.1.A1_at--257--4091Chr04:27600359..27600383 (25 bp)
CGACCGATCCCAGCGAGATGAGCAT
LOC_Os04g46910
Os.23440.1.A1_at--446--511Chr04:27600330..27600354 (25 bp)
ATCGTCAAAGCGAGAGCCCTCTGAA
LOC_Os04g46910
Os.23440.1.A1_at--816--11Chr04:27600306..27600330 (25 bp)
ATTAACCAAGATGTTCCCAAGCCTC
LOC_Os04g46910
Os.23440.1.A1_at--612--4571Chr04:27600265..27600289 (25 bp)
GCGCGTGCTAGCTGATCAAGCGATC
LOC_Os04g46910
Os.23440.1.A1_at--510--631Chr04:27600220..27600244 (25 bp)
ATGCTCTCATGCTCCAGCAGGAACA
LOC_Os04g46910
Os.23440.1.A1_at--657--3011Chr04:27600191..27600215 (25 bp)
AATGCTTGTTTTTGCATCGGGTTCC
LOC_Os04g46910
Os.23440.1.A1_at--813--4931Chr04:27600178..27600202 (25 bp)
GCATCGGGTTCCTGCATATATGCAG
LOC_Os04g46910
Os.23440.1.A1_at--522--5011Chr04:27600157..27600181 (25 bp)
GCAGGCTTTCAGTGTTTGATCCTAC
LOC_Os04g46910
Os.23440.1.A1_at--1133--9231Chr04:27600138..27600162 (25 bp)
TCCTACCTGTCGATCAGAGTACTGT
LOC_Os04g46910
Os.23440.1.A1_at--55--7011Chr04:27600099..27600123 (25 bp)
GTACTCCTGTAAACTAGATGATCTT
LOC_Os04g46910
Os.23440.1.A1_at--468--10351Chr04:27600075..27600099 (25 bp)
TTTATCTTCTCCGATCTGGCCCATT
LOC_Os04g46910
Target Sequence 
CGACCGATCCCAGCGAGATGAGCATGGACATCGTCAAAGCGAGAGCCCTCTGAATTAACCAAGATGTTCCCAAGCCTCCC
TTAATCAATCGTNCGCGCGTGCTAGCTGATCAAGCGATCAGGCATATATATATGCATGCATGCTCTCATGCTCCAGCAGG
AACAGAACAATGCTTGTTTTTGCATCGGGTTCCTGCATATATGCAGGCTTTCAGTGTTTGATCCTACCTGTCGATCAGAG
TACTGTCAATTCATTAATTAGTACTCCTGTAAACTAGATGATCTTTTATCTTCTCCGATCTGGCCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23440.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis