Browse Element(s) Details


Os.20978.1.S1_at

Description gb:BQ907274
DB_XREF= gi:22306052
DB_XREF=P003D07
CLONE=P003D07
TID=Os.20978.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20978 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g201101/11retrotransposon protein, putative, unclassified
LOC_Os12g346701/11Zinc knuckle family protein
LOC_Os06g258301/11retrotransposon protein, putative, unclassified
LOC_Os11g180701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20070Os.46995.1.S1_at1/112+11817440..11819648retrotransposon protein, putative, unclassified
LOC_Os02g20070Os.46995.1.S1_x_at1/112+11817440..11819648retrotransposon protein, putative, unclassified
LOC_Os02g20080NANA2+11824825..11827638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20090NANA2+11832009..11834182retrotransposon protein, putative, unclassified
LOC_Os02g20100OsAffx.1646.1.S1_x_at1/112+11834516..11840838retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20110Os.20978.1.S1_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20110OsAffx.7789.1.S1_x_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20120Os.27066.1.A1_x_at1/112+11854049..11857200hypothetical protein
LOC_Os02g20130OsAffx.24339.1.S1_at11/112+11860593..11860978hypothetical protein
LOC_Os02g20140OsAffx.24340.1.S1_at11/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20140Os.5644.1.S1_at1/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20150OsAffx.24341.1.S1_at11/112+11875272..11876018hypothetical protein
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20978.1.S1_at--186--4511NONE
GCCGATTGATGTCTTCGCTTACACG
NONE
Os.20978.1.S1_at--106--10631NONE
TTCGCTTACACGGTTGGTTGGCCAC
NONE
Os.20978.1.S1_at--501--8851Chr03:22942933..22942952 (20 bp)
TGATGGGCATTTATTGACCTACACC
NONE
Os.20978.1.S1_at--545--3571NONE
CATTTATTGACCTACACCCGTCGGT
NONE
Os.20978.1.S1_at--580--4451NONE
GCCTCAGCTGCTTGCACCGGTTGGT
NONE
Os.20978.1.S1_at--1150--1751NONE
ACCGGTTGGTGCTTTTATTGCCACT
NONE
Os.20978.1.S1_at--287--91NONE
ATTGCCACTTGATGGATGACTTTGT
NONE
Os.20978.1.S1_at--1080--672Chr05:15878688..15878712 (25 bp)
ATGACTTTGTTCCTACATCGGCTAC
NONE
Os.20978.1.S1_at--630--1751Chr05:15878711..15878735 (25 bp)
ACCTCTGCTGTCACCAACGGGAATA
NONE
Os.20978.1.S1_at--560--94910Chr10:10810245..10810269 (25 bp)
TCTGCCTCACTATGTCAACTGGTTC
NONE
Os.20978.1.S1_at--703--736Chr10:9161396..9161417 (22 bp)
ATGTCAACTGGTTCACCGTTGACTA
NONE
Target Sequence 
GCCGATTGATGTCTTCGCTTACACGGTTGGTTGGCCACACCACCGTTGATGGGCATTTATTGACCTACACCCGTCGGTCG
CCTCAGCTGCTTGCACCGGTTGGTGCTTTTATTGCCACTTGATGGATGACTTTGTTCCTACATCGGCTACCTCTGCTGTC
ACCAACGGGAATACTAAAAGCTAAGTCATCATTTATTTCATTCTTTATATGATATTTTCTTTTTCCTCTGCCTCACTATG
TCAACTGGTTCACCGTTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis