Browse Element(s) Details


Os.21188.1.A1_at

Description gb:BQ908063
DB_XREF= gi:22306841
DB_XREF=Q006F11
CLONE=Q006F11
TID=Os.21188.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21188 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194339.1 (A.thaliana) disease resistance protein RPS2 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1490011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed
LOC_Os03g14920OsAffx.12868.1.S1_at11/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_x_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified
LOC_Os03g14940NANA3+8123291..8124148retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0005886cellular_componentplasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21188.1.A1_at--95--4571Chr03:8101665..8101689 (25 bp)
GCGCCCGTGCTGATCTGAACAAAAC
LOC_Os03g14900
Os.21188.1.A1_at--202--5511Chr03:8101649..8101673 (25 bp)
GAACAAAACAACGTCGTCGTCGCTG
LOC_Os03g14900
Os.21188.1.A1_at--1131--4651Chr03:8101602..8101626 (25 bp)
GCGTGCGTGCATCCGATTTTCCGAT
LOC_Os03g14900
Os.21188.1.A1_at--824--551Chr03:8101592..8101616 (25 bp)
ATCCGATTTTCCGATGCAGAGGTTG
LOC_Os03g14900
Os.21188.1.A1_at--980--10491Chr03:8101570..8101594 (25 bp)
TTGAAGTTTTGGAGACGTGCTGATC
LOC_Os03g14900
Os.21188.1.A1_at--320--1911Chr03:8101556..8101580 (25 bp)
ACGTGCTGATCTGTTAGGGAAGGAA
LOC_Os03g14900
Os.21188.1.A1_at--61--7591Chr03:8101473..8101497 (25 bp)
GGGACGGTTTCTTTTGAACATCTTG
LOC_Os03g14900
Os.21188.1.A1_at--589--5491Chr03:8101458..8101482 (25 bp)
GAACATCTTGTGTTTCGTTGCCAAA
LOC_Os03g14900
Os.21188.1.A1_at--354--2391Chr03:8101429..8101453 (25 bp)
AAACTCAACCGCTGAACATTGCACT
LOC_Os03g14900
Os.21188.1.A1_at--557--2531Chr03:8101385..8101409 (25 bp)
AACTATATCCTATGCTACAAACAAG
LOC_Os03g14900
Os.21188.1.A1_at--1140--9871Chr03:8101335..8101359 (25 bp)
TACTAGTTTTGTGCTCGAATTCCCG
LOC_Os03g14900
Target Sequence 
GCGCCCGTGCTGATCTGAACAAAACAACGTCGTCGTCGCTGCAATCTCGCCGCGCCGTGCCGCGCGTGCGTGCATCCGAT
TTTCCGATGCAGAGGTTGAAGTTTTGGAGACGTGCTGATCTGTTAGGGAAGGAACGTCGGGGGAAATTTGGTGACTGTTA
ATTTGGATTATTTTTCATTTTCCTTTAAATTTGGGACGGTTTCTTTTGAACATCTTGTGTTTCGTTGCCAAAAGGNAAAC
TCAACCGCTGAACATTGCACTTCNTTCNTTGNTTTGNTCNAACTATATCCTATGCTACAAACAAGCAAACTTGAATATCT
GATATGTTCATACTAGTTTTGTGCTCGAATTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21188.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis