Browse Element(s) Details


Os.21326.1.S1_at

Description gb:AK101120.1
DB_XREF= gi:32986329
TID=Os.21326.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025I17, full insert sequence.
FL= gb:AK101120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4357011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21326.1.S1_at--613--2551Chr05:25249217..25249241 (25 bp)
AAGAGTTCCAAGTCAAAGCGGCCAA
LOC_Os05g43570
Os.21326.1.S1_at--887--2671Chr05:25249202..25249226 (25 bp)
AAGCGGCCAACTATCAAGACATTAT
LOC_Os05g43570
Os.21326.1.S1_at--289--7891Chr05:25248911..25248935 (25 bp)
TGGTTCCTTTTGATCTTGTTTCCCG
LOC_Os05g43570
Os.21326.1.S1_at--542--8771Chr05:25248895..25248919 (25 bp)
TGTTTCCCGTCCAAGCTTTGTAAAT
LOC_Os05g43570
Os.21326.1.S1_at--318--6971Chr05:25248798..25248822 (25 bp)
GTACGCGGCGATGTTTGTTTGGTTC
LOC_Os05g43570
Os.21326.1.S1_at--124--4171Chr05:25248774..25248798 (25 bp)
CGCCGTGTGTTTGGGTTACAGCTTC
LOC_Os05g43570
Os.21326.1.S1_at--138--9871Chr05:25248758..25248782 (25 bp)
TACAGCTTCGGTGATGATGGGTCTC
LOC_Os05g43570
Os.21326.1.S1_at--181--811Chr05:25248742..25248766 (25 bp)
ATGGGTCTCAGGTTACAGCTAGTGT
LOC_Os05g43570
Os.21326.1.S1_at--436--2151Chr05:25248728..25248752 (25 bp)
ACAGCTAGTGTATACTTGCTACCAT
LOC_Os05g43570
Os.21326.1.S1_at--1034--10711Chr05:25248713..25248737 (25 bp)
TTGCTACCATTTCTGACGGGCATGT
LOC_Os05g43570
Os.21326.1.S1_at--173--5171Chr05:25248683..25248707 (25 bp)
GCAATTAAATTCACCCCTCTTTTGT
LOC_Os05g43570
Target Sequence 
AAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTT
CTTAAATATGTTGCCCCNTAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACAATACCAACCTCGACATA
AATAGGATAAGGAGGTTTTCAAAAGTAAAACACAGATAATTAAAACAAGAAAAAAATTGGTTCCTTTTGATCTTGTTTCC
CGTCCAAGCTTTGTAAATTCTAACCGATGCTTTCTCTTCTCAAATTCTTCATACAAAAATCCCTCCTCTGTCCAAAGAGT
GGTGTTTGCTGTACGCGGCGATGTTTGTTTGGTTCGCCGTGTGTTTGGGTTACAGCTTCGGTGATGATGGGTCTCAGGTT
ACAGCTAGTGTATACTTGCTACCATTTCTGACGGGCATGTGTNTTGCAATTAAATTCACCCCTCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis