Browse Element(s) Details


Os.21634.1.S1_at

Description gb:AK101713.1
DB_XREF= gi:32986922
TID=Os.21634.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GA 2-oxidase (OJ1414_E05.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060N07, full insert sequence.
FL= gb:AK101713.1 gb:AK060666.1 gb:AK060714.1 gb:AB092485.1 gb:AK099350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5524011/11Gibberellin 2-beta-dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55240Os.21634.1.S1_at11/111+32121953..32124472Gibberellin 2-beta-dioxygenase, putative, expressed
LOC_Os01g55250OsAffx.11611.1.S1_at11/111+32126750..32127562hypothetical protein
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21634.1.S1_at--792--5451Chr01:32123896..32123920 (25 bp)
GAACTGGCCGGTCAAGCAACAACGA
LOC_Os01g55240
Os.21634.1.S1_at--905--2451Chr01:32123913..32123937 (25 bp)
AACAACGACTTTACTGCATGGCAGC
LOC_Os01g55240
Os.21634.1.S1_at--167--1571Chr01:32123939..32123963 (25 bp)
AGCTACCTTAGCTATGTCTCACGCA
LOC_Os01g55240
Os.21634.1.S1_at--1028--6991Chr01:32123967..32123991 (25 bp)
GTACGGTACACCATGACCACGAGAA
LOC_Os01g55240
Os.21634.1.S1_at--256--4871Chr01:32124088..32124112 (25 bp)
GCTAGATTTTTCTCGTGTGGCTAAT
LOC_Os01g55240
Os.21634.1.S1_at--92--8651Chr01:32124130..32124154 (25 bp)
TGGGCTCCTTTCCTGTTTCGGAATA
LOC_Os01g55240
Os.21634.1.S1_at--342--7991Chr01:32124164..32124188 (25 bp)
GGATGAACAGCCTCCAATAGTTAAT
LOC_Os01g55240
Os.21634.1.S1_at--336--10312Chr01:32124237..32124261 (25 bp)
TTTCTTTTTTCCTCTTGCCTTTGAT
LOC_Os01g55240
Os.21634.1.S1_at--432--291Chr01:32124373..32124397 (25 bp)
ATAGTCTCTCTCTTTCGTTATGCAA
LOC_Os01g55240
Os.21634.1.S1_at--1148--6771Chr01:32124389..32124413 (25 bp)
GTTATGCAACTGACTTCTGCGCGGT
LOC_Os01g55240
Os.21634.1.S1_at--1023--10591Chr01:32124403..32124427 (25 bp)
TTCTGCGCGGTCCAAATGCATTGAT
LOC_Os01g55240
Target Sequence 
GAACTGGCCGGTCAAGCAACAACGACTTTACTGCATGGCAGCTAGCTACCTTAGCTATGTCTCACGCACACGTACGGTAC
ACCATGACCACGAGAAGATGAAGCTGCTTAAGAGAGAAAAAGAAAAGAAAATAAAAACAGGAAGAAGATAATAACTTCAA
GATGCACAATGTACAGCCAGGTTGGATGGATAGCTAGATTTTTCTCGTGTGGCTAATCACCGTGTGTGGTGAGGTGGGCT
CCTTTCCTGTTTCGGAATACTGATCGATGGATGAACAGCCTCCAATAGTTAATGTTAACCAAATATAGCACAACAAAGGG
GTTCTTTTCTTCCTTNGGTTGTTTCTTTTTTCCTCTTGCCTTTGATTTTCTCGTCATGCTTTCTGAGCATTAATTATGTG
TGCGTGTATTTCGGTATACGTAACGTACTTTTACCTATGTGTGTATAGTACGTGGCTTGTGTTAACAAGTAAATATTATA
GTCTCTCTCTTTCGTTATGCAACTGACTTCTGCGCGGTCCAAATGCATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis