Browse Element(s) Details


Os.9238.2.S1_at

Description gb:AK121744.1
DB_XREF= gi:37991367
TID=Os.9238.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) calcyclin binding protein-like (OJ1414_E05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086D07, full insert sequence.
FL= gb:AK121744.1 gb:AK058268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5527011/11SGS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55240Os.21634.1.S1_at11/111+32121953..32124472Gibberellin 2-beta-dioxygenase, putative, expressed
LOC_Os01g55250OsAffx.11611.1.S1_at11/111+32126750..32127562hypothetical protein
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9238.2.S1_at--635--7711Chr01:32139490..32139514 (25 bp)
GGTGGAGACTACTTTTAAGCCTATG
LOC_Os01g55270
Os.9238.2.S1_at--397--2751Chr01:32139432..32139456 (25 bp)
AAGAACTACCGATGTGCCATACCTA
LOC_Os01g55270
Os.9238.2.S1_at--849--5151Chr01:32139377..32139401 (25 bp)
GCAAGGTTTTAGTCAAGCCTACAAA
LOC_Os01g55270
Os.9238.2.S1_at--446--8991Chr01:32138453..32138477 (25 bp)
TGAAGCGCACAATAGCCAAGGCCTG
LOC_Os01g55270
Os.9238.2.S1_at--448--3211Chr01:32138437..32138461 (25 bp)
CAAGGCCTGGTCTGATGCAAGGTCT
LOC_Os01g55270
Os.9238.2.S1_at--709--7911Chr01:32138388..32138412 (25 bp)
GGATTACCTTGAGTTTGCCCGAAGC
LOC_Os01g55270
Os.9238.2.S1_at--454--9491Chr01:32138357..32138381 (25 bp)
TCTGCTGAGCCAGTTCGTTGTGATT
LOC_Os01g55270
Os.9238.2.S1_at--412--1151Chr01:32138301..32138325 (25 bp)
ACGAACTGGAAATCGGTCACGCCGG
LOC_Os01g55270
Os.9238.2.S1_at--714--4491Chr01:32138281..32138305 (25 bp)
GCCGGGCCTGTTCATTTGTGAAGAA
LOC_Os01g55270
Os.9238.2.S1_at--974--2051Chr01:32138232..32138256 (25 bp)
ACTTCTGCGTGTGATCAGCCTTTAA
LOC_Os01g55270
Os.9238.2.S1_at--800--8191Chr01:32138206..32138230 (25 bp)
GGAATGATTATGTGCCAATGGCCGC
LOC_Os01g55270
Target Sequence 
GGTGGAGACTACTTTTAAGCCTATGTCAGTAGATACAAAATTCCATGATGTGAAGGGCAAGAACTACCGATGTGCCATAC
CTAAGCTGCACAAAGAAATTGTTCCTGAGAAATGCAAGGTTTTAGTCAAGCCTACAAAGATTATTGTGACGCTTTACAAA
GCTTCCAAAGGCAACTGGTTAGACTTGCATTTCAAGGAGGATAAGTTCAAGCCAAGCATGGCTAAGGAGAAGGATCCAAT
GTCTGGAATTATGGATTTGATGAAGAACATGTATGAGGAAGGTGACGAAGACATGAAGCGCACAATAGCCAAGGCCTGGT
CTGATGCAAGGTCTGGGAAGACCGCCGATTCAGTGAGGGGATTACCTTGAGTTTGCCCGAAGCGTTGGCTCTGCTGAGCC
AGTTCGTTGTGATTGAATGCACTTGGTTATCTTATTTTGCATGTAACGAACTGGAAATCGGTCACGCCGGGCCTGTTCAT
TTGTGAAGAAAACATCTTCTCGTGTGATATTATCACTTCTGCGTGTGATCAGCCTTTAATGGAATGATTATGTGCCAATG
GCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9238.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis