Browse Element(s) Details


Os.42075.1.A1_x_at

Description gb:CF312018
DB_XREF= gi:33683779
DB_XREF=ABF--07-I18.g1
CLONE=ABF--07-I18
TID=Os.42075.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.1 (B1131G08.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5529011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55320NANA1+32167288..32168053heavy metal-associated domain containing protein, expressed
LOC_Os01g55330NANA1+32173237..32173632hypothetical protein
LOC_Os01g55340Os.4186.1.S1_a_at11/111+32177389..32178465Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42075.1.A1_x_at--781--1571Chr01:32154056..32154080 (25 bp)
AGCTGGGTGTTAGACCTGACGGTTC
LOC_Os01g55290
Os.42075.1.A1_x_at--542--8931Chr01:32154040..32154064 (25 bp)
TGACGGTTCGATTATCAGAATGCTT
LOC_Os01g55290
Os.42075.1.A1_x_at--1047--5571Chr01:32153962..32153986 (25 bp)
GAAATATCCACCACCAAAATGGGAA
LOC_Os01g55290
Os.42075.1.A1_x_at--579--9371Chr01:32153935..32153959 (25 bp)
TCGACGCATCAAAGGCAAACGCATC
LOC_Os01g55290
Os.42075.1.A1_x_at--434--1851Chr01:32153768..32153792 (25 bp)
ACGAAGCAGCTTGTGGAGACCTTGA
LOC_Os01g55290
Os.42075.1.A1_x_at--1115--6931Chr01:32153737..32153761 (25 bp)
GTAGTTCAGAGCTTTCCTTTGGTAT
LOC_Os01g55290
Os.42075.1.A1_x_at--71--7871Chr01:32153717..32153741 (25 bp)
GGTATTATTCATGCCTGCTTCATCA
LOC_Os01g55290
Os.42075.1.A1_x_at--692--3691Chr01:32153654..32153678 (25 bp)
CTAGTTAGATTCAGTTTTGTGCCAT
LOC_Os01g55290
Os.42075.1.A1_x_at--776--5332Chr02:34868648..34868717 (24 bp)
GAAGTCATGGATTGCCACATTAGAA
NONE
Os.42075.1.A1_x_at--1014--10011Chr01:32153563..32153587 (25 bp)
TAGCACGATTAGCATGTTATACAAG
LOC_Os01g55290
Os.42075.1.A1_x_at--1146--5651Chr01:32153518..32153542 (25 bp)
GAGTTTCCTCGGAGTTTGTAGTCCT
LOC_Os01g55290
Target Sequence 
AGCTGGGTGTTAGACCTGACGGTTCGATTATCAGAATGCTTGGTGAGGTATTCCAGAAGTTAGGGATGTTGGACAAATAT
GTAAAATTAAAGAAGAAATATCCACCACCAAAATGGGAATATCGACGCATCAAAGGCAAACGCATCAGAGTAAAAGTCTA
CCCAAAAGACGAAATTGAAGAACCAATGAGAAAAGCTGGCACAGATGAAGTGGAAGAGGAAGAAAACATGGATGTAGATA
GTGAATTGGAAGAAGCGGCAAGTGCAGGCCTGGACAGGAATGTATTGGACGAAGCAGCTTGTGGAGACCTTGAATTTGTG
TAGTTCAGAGCTTTCCTTTGGTATTATTCATGCCTGCTTCATCAAAGCAGGTTAGAACAATGAACTGATAAGAAGTAACT
GACTAGTTAGATTCAGTTTTGTGCCATGAAGTCATGGATTGCCACATTAGAAGATGTAGAATATGTAAAACATTAGCTCA
TTACAGATTTAATTAGCACGATTAGCATGTTATACAAGGCCATGTTGTTTTAGAACAAGAGTTTCCTCGGAGTTTGTAGT
CCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42075.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis