Browse Element(s) Details


Os.26380.2.S1_x_at

Description gb:NM_191299.1
DB_XREF= gi:34909681
GEN=OJ1414_E05.18
TID=Os.26380.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1414_E05.18 (OJ1414_E05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1414_E05.18 (OJ1414_E05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5528011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55240Os.21634.1.S1_at11/111+32121953..32124472Gibberellin 2-beta-dioxygenase, putative, expressed
LOC_Os01g55250OsAffx.11611.1.S1_at11/111+32126750..32127562hypothetical protein
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55320NANA1+32167288..32168053heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26380.2.S1_x_at--109--4391Chr01:32142786..32142810 (25 bp)
CCAAGAAGACTGAGCAGCAGCTGAA
LOC_Os01g55280
Os.26380.2.S1_x_at--1038--4191Chr01:32142719..32142743 (25 bp)
CCCCGCGACGGATGTGTTCGAGGTC
LOC_Os01g55280
Os.26380.2.S1_x_at--967--7131Chr01:32142706..32142730 (25 bp)
GTGTTCGAGGTCGTCCGGACCGAAT
LOC_Os01g55280
Os.26380.2.S1_x_at--1139--7371Chr01:32142631..32142655 (25 bp)
GTGAGCTGTGGCATAAAGGCCGCTT
LOC_Os01g55280
Os.26380.2.S1_x_at--364--4931Chr01:32142621..32142645 (25 bp)
GCATAAAGGCCGCTTTGGCTGAGAA
LOC_Os01g55280
Os.26380.2.S1_x_at--233--6391Chr01:32142566..32142590 (25 bp)
GATCGAAGAGGAGAGCATTGACGCA
LOC_Os01g55280
Os.26380.2.S1_x_at--1114--4931Chr01:32142552..32142576 (25 bp)
GCATTGACGCAACGGCCATTGACTC
LOC_Os01g55280
Os.26380.2.S1_x_at--780--3251Chr01:32142543..32142567 (25 bp)
CAACGGCCATTGACTCCGGCGAGAA
LOC_Os01g55280
Os.26380.2.S1_x_at--834--651Chr01:32142507..32142531 (25 bp)
AGGTCGCGGAACTAAAGGCCAAGCT
LOC_Os01g55280
Os.26380.2.S1_x_at--707--951Chr01:32142474..32142498 (25 bp)
AGGACATGGAGGTCGCCATACTCAC
LOC_Os01g55280
Os.26380.2.S1_x_at--117--9731Chr01:32142432..32142456 (25 bp)
TCAAGAAGCAGGTTGGTGAAGCCGC
LOC_Os01g55280
Target Sequence 
CCAAGAAGACTGAGCAGCAGCTGAAGGTGACGGAGCCGCCGGCCGAGGAGGAGAGCAGCATAAACTCCCCCGCGACGGAT
GTGTTCGAGGTCGTCCGGACCGAATCGGGGGATAAGGAGAACCAGAGCGCGGCCGGCGCCGAGGACGGCGAGGAGGTGAG
CTGTGGCATAAAGGCCGCTTTGGCTGAGAAGGAACTGGAGGAGGAAGAGACAAAGAAGATGATCGAAGAGGAGAGCATTG
ACGCAACGGCCATTGACTCCGGCGAGAAGGAGAACCCGGAGGTCGCGGAACTAAAGGCCAAGCTGATGGCGAAGGACATG
GAGGTCGCCATACTCACGGCCGACAATGCCGAGCTCAAGAAGCAGGTTGGTGAAGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26380.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis