Browse Element(s) Details


Os.23673.1.S1_at

Description gb:AK102734.1
DB_XREF= gi:32987943
TID=Os.23673.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106B06, full insert sequence.
FL= gb:AK102734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5529011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55260Os.9238.1.A2_at11/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55260Os.9238.1.A1_a_at10/111+32133810..32138711ATPase, AAA family protein, expressed
LOC_Os01g55270Os.9238.2.S1_at11/111+32138193..32141441SGS domain containing protein, expressed
LOC_Os01g55280Os.26380.2.S1_x_at11/111+32142365..32143622expressed protein
LOC_Os01g55290Os.23673.1.S1_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55290Os.42075.1.A1_x_at11/111+32152814..32157027pentatricopeptide, putative, expressed
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55320NANA1+32167288..32168053heavy metal-associated domain containing protein, expressed
LOC_Os01g55330NANA1+32173237..32173632hypothetical protein
LOC_Os01g55340Os.4186.1.S1_a_at11/111+32177389..32178465Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23673.1.S1_at--936--9551Chr01:32153476..32153500 (25 bp)
TCATTCCTTAGAGCACTCGTTCTAC
LOC_Os01g55290
Os.23673.1.S1_at--436--71Chr01:32153474..32153498 (25 bp)
ATTCCTTAGAGCACTCGTTCTACTT
LOC_Os01g55290
Os.23673.1.S1_at--87--9251Chr01:32153472..32153496 (25 bp)
TCCTTAGAGCACTCGTTCTACTTGT
LOC_Os01g55290
Os.23673.1.S1_at--14--3671Chr01:32153470..32153494 (25 bp)
CTTAGAGCACTCGTTCTACTTGTTA
LOC_Os01g55290
Os.23673.1.S1_at--208--10031Chr01:32153468..32153492 (25 bp)
TAGAGCACTCGTTCTACTTGTTAGA
LOC_Os01g55290
Os.23673.1.S1_at--60--5951Chr01:32153466..32153490 (25 bp)
GAGCACTCGTTCTACTTGTTAGATT
LOC_Os01g55290
Os.23673.1.S1_at--442--5111Chr01:32153464..32153488 (25 bp)
GCACTCGTTCTACTTGTTAGATTTA
LOC_Os01g55290
Os.23673.1.S1_at--432--9531Chr01:32153456..32153480 (25 bp)
TCTACTTGTTAGATTTATGTGTCAA
LOC_Os01g55290
Os.23673.1.S1_at--1063--6531Chr01:32153445..32153469 (25 bp)
GATTTATGTGTCAATATGGTAGAAC
LOC_Os01g55290
Os.23673.1.S1_at--763--7851Chr01:32153428..32153452 (25 bp)
GGTAGAACAAAGCTAATCTTATACT
LOC_Os01g55290
Os.23673.1.S1_at--31--1571Chr01:32153418..32153442 (25 bp)
AGCTAATCTTATACTTGTTGTACCG
LOC_Os01g55290
Target Sequence 
TCATTCCTTAGAGCACTCGTTCTACTTGTTAGATTTATGTGTCAATATGGTAGAACAAAGCTAATCTTATACTTGTTGTA
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis