Browse Element(s) Details


Os.21811.1.S1_at

Description gb:AK110823.1
DB_XREF= gi:32996032
TID=Os.21811.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21811 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H04, full insert sequence.
FL= gb:AK110823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0937011/11phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os06g084001/11LIM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09380NANA9+5032798..5033265hypothetical protein
LOC_Os09g09390NANA9+5040642..5041948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09400NANA9+5046339..5050853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09410OsAffx.31107.1.S1_at11/119+5051240..5051806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21811.1.S1_at--976--2211Chr09:5021061..5021085 (25 bp)
ACAAGTAAATCAATGGTGGTCGCCC
LOC_Os09g09370
Os.21811.1.S1_at--272--2271Chr09:5021055..5021079 (25 bp)
AAATCAATGGTGGTCGCCCATGAAT
LOC_Os09g09370
Os.21811.1.S1_at--1037--7491Chr09:5021046..5021070 (25 bp)
GTGGTCGCCCATGAATGGATGACAT
LOC_Os09g09370
Os.21811.1.S1_at--470--5291Chr09:5021034..5021058 (25 bp)
GAATGGATGACATTCTTGTTTCTTC
LOC_Os09g09370
Os.21811.1.S1_at--777--8772Chr09:5021018..5021042 (25 bp)
TGTTTCTTCTGATCCCTTGCTTGAA
LOC_Os09g09370
Os.21811.1.S1_at--102--9572Chr06:4093025..4093044 (20 bp)
TCTTCTGATCCCTTGCTTGAAATTT
LOC_Os06g08400
Os.21811.1.S1_at--609--10251Chr09:5020926..5020950 (25 bp)
TTTGATTTCAGTGCATCCCATTTTT
LOC_Os09g09370
Os.21811.1.S1_at--147--7331Chr09:5020916..5020940 (25 bp)
GTGCATCCCATTTTTGGTGGGAGAT
LOC_Os09g09370
Os.21811.1.S1_at--887--1851Chr09:5020803..5020827 (25 bp)
ACGACCTAGCATAGCTCACCAATCA
LOC_Os09g09370
Os.21811.1.S1_at--987--3551Chr09:5020767..5020791 (25 bp)
CATCTTCATCATTCATTCCACATAT
LOC_Os09g09370
Os.21811.1.S1_at--1161--71Chr09:5020753..5020777 (25 bp)
ATTCCACATATGTATCTACTGTTAC
LOC_Os09g09370
Target Sequence 
ACAAGTAAATCAATGGTGGTCGCCCATGAATGGATGACATTCTTGTTTCTTCTGATCCCTTGCTTGAAATTTGTTGATAC
TTGTGATTCTTGATTTTTTTTTNCTTTTGGTATTCTTTTTCTATTTTCTTCTTCATTTTGATTTCAGTGCATCCCATTTT
TGGTGGGAGATGTGAGGGNCATATTGTTGAAAGAGGGAAGAGANTGAGGGGTAGATTTTGTAATTAAATGGATGGGGGAT
AATAAGAGGCTATAATCANACGACCTAGCATAGCTCACCAATCAANAAAAATGTCCATCTTCATCATTCATTCCACATAT
GTATCTACTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis