Browse Element(s) Details


Os.25163.1.A1_x_at

Description gb:AK102054.1
DB_XREF= gi:32987263
TID=Os.25163.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082C15, full insert sequence.
FL= gb:AK102054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0933011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA
LOC_Os09g09290Os.40360.1.S1_x_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40360.1.S1_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40855.5.S1_x_at1/119+4971698..4979074expressed protein
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein
LOC_Os09g09320Os.50376.2.S1_at11/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09320Os.50376.1.S1_a_at10/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25163.1.A1_x_at--895--5191Chr09:4991921..4991945 (25 bp)
GCAATTGTGGCGCAGTTGACATCAC
LOC_Os09g09330
Os.25163.1.A1_x_at--1069--6651Chr09:4991907..4991931 (25 bp)
GTTGACATCACTTTAGCGTACCTTT
LOC_Os09g09330
Os.25163.1.A1_x_at--644--9991Chr09:4991894..4991918 (25 bp)
TAGCGTACCTTTACCAGGCAGTGGA
LOC_Os09g09330
Os.25163.1.A1_x_at--430--731Chr09:4991656..4991680 (25 bp)
ATGTTGGTCACTACTGTTCCTTCAA
LOC_Os09g09330
Os.25163.1.A1_x_at--22--8791Chr09:4991642..4991666 (25 bp)
TGTTCCTTCAAAGCAAACCGCCATG
LOC_Os09g09330
Os.25163.1.A1_x_at--774--2371Chr09:4991628..4991652 (25 bp)
AAACCGCCATGGATTTGCCAGTCAA
LOC_Os09g09330
Os.25163.1.A1_x_at--964--6651Chr09:4991594..4991618 (25 bp)
GTTGAGCCTGGAGCTATCACAGTGA
LOC_Os09g09330
Os.25163.1.A1_x_at--42--7191Chr09:4991559..4991583 (25 bp)
GTCTGTTATCCCTCTATATCTGTAT
LOC_Os09g09330
Os.25163.1.A1_x_at--1036--471Chr09:4991542..4991566 (25 bp)
ATCTGTATGTGTCGCACTTGCTGAA
LOC_Os09g09330
Os.25163.1.A1_x_at--678--2031Chr09:4991508..4991532 (25 bp)
ACTAGTGGTTGGTTTCTATGCTGAA
LOC_Os09g09330
Os.25163.1.A1_x_at--391--6891Chr09:4991422..4991446 (25 bp)
GTATAGCATTGCTTCGTTTGCGATA
LOC_Os09g09330
Target Sequence 
GCAATTGTGGCGCAGTTGACATCACTTTAGCGTACCTTTACCAGGCAGTGGAGGCAACAATAGAAGTTTCCATATCAAAA
GTGCCTAGGGGGTTTCAATTTATCTCTGAGTGTGTTTGTTCTTATTGATAAGGTACGACAAGAAATTCAACTCTTTGATG
GCATGGTTGGCGAGCCTTGTGGCTTAAGAANGTATGTGGTCGTAGTAGCGTNGGATACCTGGATGCATTTGAAGTTCAAG
GTATGTGAAAAAGGCTCTAAAAATGATGTTGGTCACTACTGTTCCTTCAAAGCAAACCGCCATGGATTTGCCAGTCAACA
AATAGTTGTTGAGCCTGGAGCTATCACAGTGAAGGTGAATTGGTCTGTTATCCCTCTATATCTGTATGTGTCGCACTTGC
TGAATATGACTTAACTAGTGGTTGGTTTCTATGCTGAAAGGGAGTACTCTTAGATATATATGTATATTATCTAGTAGTAT
TATTCAATTTGATTGTGGCGTATAGCATTGCTTCGTTTGCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25163.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis