Browse Element(s) Details


Os.50376.2.S1_at

Description gb:AK061549.1
DB_XREF= gi:32971567
TID=Os.50376.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A10, full insert sequence.
FL= gb:AK061549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0932011/11Nuclear transport factor 2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA
LOC_Os09g09290Os.40360.1.S1_x_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40360.1.S1_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40855.5.S1_x_at1/119+4971698..4979074expressed protein
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein
LOC_Os09g09320Os.50376.2.S1_at11/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09320Os.50376.1.S1_a_at10/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006606biological_processprotein import into nucleus
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50376.2.S1_at--900--4551Chr09:4990088..4990112 (25 bp)
GCGCCTGTTTGACGGCTGATAACTT
LOC_Os09g09320
Os.50376.2.S1_at--1092--10791Chr09:4990143..4990167 (25 bp)
TTGTCACCTTTGCTCCCAAGATAGA
LOC_Os09g09320
Os.50376.2.S1_at--332--4712Chr12:1289213..1289235 (23 bp)
GCTGGAGTTATCTTGGTGACCTGAA
NONE
Os.50376.2.S1_at--165--171Chr09:4990374..4990398 (25 bp)
ATTTTCGACAACAAGGCCATTCCGG
LOC_Os09g09320
Os.50376.2.S1_at--473--8672Chr12:1289349..1289373 (25 bp)
TGTGTCCACTGCAAGCCGGAAGCAA
NONE
Os.50376.2.S1_at--348--6971Chr09:4990519..4990543 (25 bp)
GTAGCTCGCTGCTCTGTAGTACAGA
LOC_Os09g09320
Os.50376.2.S1_at--872--5751Chr09:4990542..4990566 (25 bp)
GACGTGCTTTAGTGTCTGGCAGGCA
LOC_Os09g09320
Os.50376.2.S1_at--954--8752Chr12:1289465..1289489 (25 bp)
TGTAGCCTGAATCTGCAGCTTGCAC
NONE
Os.50376.2.S1_at--978--5052Chr12:1289479..1289503 (25 bp)
GCAGCTTGCACCTTTGTAATTTGTT
NONE
Os.50376.2.S1_at--149--8692Chr12:1289507..1289531 (25 bp)
TGTGACTTTTTTCCCCTATCTTAAT
NONE
Os.50376.2.S1_at--1079--9731Chr09:4990638..4990662 (25 bp)
TAATAAACTTCGACTGGCTTCCGCC
LOC_Os09g09320
Target Sequence 
GCGCCTGTTTGACGGCTGATAACTTGCAGCGGCGGGGTTGGCACCTAGCCCCGGTTTGTCACCTTTGCTCCCAAGATAGA
GAGACATGCGCACACATCTTCCTCAGCTGTCGTTACACGCAGCAGGTGTGTGCGACTGTGCGTGGCCGCCTTGGTCTGTC
CTCCACTACACCGTCGGCTGATCTTTCCTCCTGGTGGCGCTCCGCGCGGAAATCAATTTCTAAACAAGACCGTAAGACTT
TCGATGCTGGAGTTATCTTGGTGACCTGAAGGAACGCAATGCTAGAATTTTCGACAACAAGGCCATTCCGGCGGCGCACT
TATGTGCAGCAATGGAAGATGAATGGACCACTTGGGGTGCAGCAGGGCTGCTGTGTCCACTGCAAGCCGGAAGCAACCTG
ATGGCGAGAGAGCAACATTAAGCCGGTGGTGGTAGCTCGCTGCTCTGTAGTACAGACGTGCTTTAGTGTCTGGCAGGCAG
CATCCTCTGTAGCCTGAATCTGCAGCTTGCACCTTTGTAATTTGTTTCTTGTGACTTTTTTCCCCTATCTTAATAAACTT
CGACTGGCTTCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50376.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis