Browse Element(s) Details


Os.53720.1.S1_at

Description gb:AK099488.1
DB_XREF= gi:32984697
TID=Os.53720.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026J10, full insert sequence.
FL= gb:AK099488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0933011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA
LOC_Os09g09290Os.40360.1.S1_x_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40360.1.S1_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40855.5.S1_x_at1/119+4971698..4979074expressed protein
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein
LOC_Os09g09320Os.50376.2.S1_at11/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09320Os.50376.1.S1_a_at10/119+4987979..4990687Nuclear transport factor 2 domain containing protein, expressed
LOC_Os09g09330Os.25163.1.A1_x_at11/119+4991064..4996394expressed protein
LOC_Os09g09330Os.53720.1.S1_at11/119+4991064..4996394expressed protein
LOC_Os09g09350Os.50394.1.S1_at3/119+5004304..5005287hypothetical protein
LOC_Os09g09360Os.52247.1.S1_at10/119+5005931..5019011expressed protein
LOC_Os09g09370Os.21811.1.S1_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed
LOC_Os09g09370OsAffx.29776.1.S1_x_at11/119+5020749..5028455phototropic-responsive NPH3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53720.1.S1_at--946--9391Chr09:4991409..4991433 (25 bp)
TCGTTTGCGATATTGGTCTATGTTC
LOC_Os09g09330
Os.53720.1.S1_at--590--8591Chr09:4991396..4991420 (25 bp)
TGGTCTATGTTCTGCTTAATTTGTT
LOC_Os09g09330
Os.53720.1.S1_at--114--10511Chr09:4991381..4991405 (25 bp)
TTAATTTGTTGCCTGCCACTGTAAA
LOC_Os09g09330
Os.53720.1.S1_at--1041--4271Chr09:4991370..4991394 (25 bp)
CCTGCCACTGTAAATCCTTAACTTA
LOC_Os09g09330
Os.53720.1.S1_at--888--1951Chr09:4991346..4991370 (25 bp)
ACTGGTTTTATCGTATGTTCTGCTA
LOC_Os09g09330
Os.53720.1.S1_at--1089--6911Chr09:4991334..4991358 (25 bp)
GTATGTTCTGCTATGACCCAGATTA
LOC_Os09g09330
Os.53720.1.S1_at--1043--5771Chr09:4991320..4991344 (25 bp)
GACCCAGATTACTAGTTTTCCTACT
LOC_Os09g09330
Os.53720.1.S1_at--589--3711Chr09:4991309..4991333 (25 bp)
CTAGTTTTCCTACTTACTGATATTA
LOC_Os09g09330
Os.53720.1.S1_at--970--5371Chr09:4991234..4991258 (25 bp)
GAAGCAAGCTCTGATATTTAAGATA
LOC_Os09g09330
Os.53720.1.S1_at--329--5311Chr09:4991147..4991171 (25 bp)
GAAGGATCAACGTATACAACCTGAT
LOC_Os09g09330
Os.53720.1.S1_at--370--2631Chr09:4991130..4991154 (25 bp)
AACCTGATGTATGCTTGTTGCAGAG
LOC_Os09g09330
Target Sequence 
TCGTTTGCGATATTGGTCTATGTTCTGCTTAATTTGTTGCCTGCCACTGTAAATCCTTAACTTACTGGTTTTATCGTATG
TTCTGCTATGACCCAGATTACTAGTTTTCCTACTTACTGATATTAAGATATAAATGATGACGGACAATTTTGGGGTTTTC
TGAAAATATCAAGATGAAGCAAGCTCTGATATTTAAGATATTGAACAAATATTCAAGAAATACAAAAATATAGTGTGTAT
TTACGTATGTGGAAGGGAGAAAGAAGGATCAACGTATACAACCTGATGTATGCTTGTTGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis