Browse Element(s) Details


Os.22272.1.S1_at

Description gb:AK121703.1
DB_XREF= gi:37991326
TID=Os.22272.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22272 (NCBI UniGene Cluster)
UG_TITLE=OsARF6b mRNA for auxin response factor 6b, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074F07, full insert sequence.
FL= gb:AK121703.1 gb:AK065025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4195010/11Auxin response factor 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g41920Os.27252.1.S1_a_at11/1112+25950908..25954370Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009908biological_processflower development
GO:0009942biological_processlongitudinal axis specification
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22272.1.S1_at--942--5511Chr12:25969433..25969457 (25 bp)
GAAAATGACATTCTTCTCGTCGGCG
LOC_Os12g41950
Os.22272.1.S1_at--150--9411NONE
TCGTCGGCGACGATCCATGGCAGGA
NONE
Os.22272.1.S1_at--583--5231Chr12:25969142..25969166 (25 bp)
GAATATCGCCGGAAACATTGCATCT
LOC_Os12g41950
Os.22272.1.S1_at--1073--2391Chr12:25969130..25969154 (25 bp)
AAACATTGCATCTGTAGCGCCTCTG
LOC_Os12g41950
Os.22272.1.S1_at--82--1671Chr12:25969115..25969139 (25 bp)
AGCGCCTCTGGACTACTGAGATGTA
LOC_Os12g41950
Os.22272.1.S1_at--789--1451Chr12:25969089..25969113 (25 bp)
ACCAGAATCCAAACTAAGCACCCTT
LOC_Os12g41950
Os.22272.1.S1_at--214--2771Chr12:25969064..25969088 (25 bp)
AAGACTGCAGGGTCACCATTCGTGA
LOC_Os12g41950
Os.22272.1.S1_at--123--9071Chr12:25969034..25969058 (25 bp)
TGCATTCCATGCGATCTTCACTAGT
LOC_Os12g41950
Os.22272.1.S1_at--297--9691Chr12:25969017..25969041 (25 bp)
TCACTAGTCCTGTCCGAATCAGTAG
LOC_Os12g41950
Os.22272.1.S1_at--71--4871Chr12:25968973..25968997 (25 bp)
GCTAGATGATCCGTTGTATTCCATC
LOC_Os12g41950
Os.22272.1.S1_at--725--8251Chr12:25968857..25968881 (25 bp)
GGCAGTCGCTGTAGAATTGACCTTA
LOC_Os12g41950
Target Sequence 
GAAAATGACATTCTTCTCGTCGGCGACGATCCATGGCAGGAGTTTGCAAATAGCGTATGGTGCATCAAAATACTCTCGCC
ACAGGAGGTGCAGCAGTTGGTTCGTGGTGGAGACGGCCTTCTGTCCTCACCTGGAGCAAGGATGCAGCAGAGCAATGCCT
GCGACGACTATTNTGCAAGCCACAACATGCAGAATATCGCCGGAAACATTGCATCTGTAGCGCCTCTGGACTACTGAGAT
GTAGACCAGAATCCAAACTAAGCACCCTTAAGACTGCAGGGTCACCATTCGTGATCGCCTGCATTCCATGCGATCTTCAC
TAGTCCTGTCCGAATCAGTAGCAACTCANGTCAATAATATAGCTAGATGATCCGTTGTATTCCATCTGATCATGGACATG
CTGTATGATAGCTGCTTTAGCTCTATTAAATCTCTAATGGCAGGCAACTAGGCAAGAACAGTTNTATGATGAATGATGGC
AGTCGCTGTAGAATTGACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis