Browse Element(s) Details


Os.22285.1.S1_a_at

Description gb:AK070480.1
DB_XREF= gi:32980504
TID=Os.22285.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoenolpyruvate carboxylase (B1131G08.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049F03, full insert sequence.
FL= gb:AK070480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5535011/11Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55300Os.24887.2.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.3.S1_x_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55300Os.24887.1.S1_at11/111+32157151..32163542ImpB/MucB/SamB family protein, expressed
LOC_Os01g55310Os.32263.2.S1_x_at10/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55310Os.32263.1.S1_at9/111+32163022..32166484HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os01g55320NANA1+32167288..32168053heavy metal-associated domain containing protein, expressed
LOC_Os01g55330NANA1+32173237..32173632hypothetical protein
LOC_Os01g55340Os.4186.1.S1_a_at11/111+32177389..32178465Dof domain, zinc finger family protein, expressed
LOC_Os01g55350Os.22285.1.S1_a_at11/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55350Os.45901.1.S1_x_at1/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55360Os.15356.1.S1_at11/111+32197783..32204455Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os01g55370Os.31586.1.S1_at11/111+32216559..32218069expressed protein
LOC_Os01g55370Os.31586.2.S1_x_at11/111+32216559..32218069expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22285.1.S1_a_at--952--8451Chr01:32187032..32187056 (25 bp)
TGGCCATTTGGTGCTCGTCTTAGAG
LOC_Os01g55350
Os.22285.1.S1_a_at--143--2531Chr01:32186672..32187010 (25 bp)
AACTTCTTCTACAGGTTGCTGGACA
LOC_Os01g55350
Os.22285.1.S1_a_at--121--6691Chr01:32186658..32186682 (25 bp)
GTTGCTGGACACAAAGACCTTCTGG
LOC_Os01g55350
Os.22285.1.S1_a_at--1135--1731Chr01:32186642..32186666 (25 bp)
ACCTTCTGGAGGGAGATCCTTACTT
LOC_Os01g55350
Os.22285.1.S1_a_at--156--8831Chr01:32186596..32186620 (25 bp)
TGATTCCTACATCACAGCGCTGAAT
LOC_Os01g55350
Os.22285.1.S1_a_at--714--391Chr01:32186544..32186568 (25 bp)
ATCAGGGACCCTGGCTTCCATGTAA
LOC_Os01g55350
Os.22285.1.S1_a_at--1140--1571Chr01:32186512..32186536 (25 bp)
AGCTCACCTCTCCAAGGACATAATG
LOC_Os01g55350
Os.22285.1.S1_a_at--205--2971Chr01:32186491..32186515 (25 bp)
AATGGACTCAGGGAAGCCAGCCGCT
LOC_Os01g55350
Os.22285.1.S1_a_at--320--1951Chr01:32186355..32186379 (25 bp)
ACTGGTTCGTTCTGATGGTGTGTTA
LOC_Os01g55350
Os.22285.1.S1_a_at--293--151Chr01:32186319..32186343 (25 bp)
ATTAGTGTAGTTTGCACCTCTATGC
LOC_Os01g55350
Os.22285.1.S1_a_at--844--6851Chr01:32186280..32186304 (25 bp)
GTTTGCACCTCTGAACTCTATATGT
LOC_Os01g55350
Target Sequence 
TGGCCATTTGGTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGGTTGCTGGACACAAAGACCT
TCTGGAGGGAGATCCTTACTTGAGGCAGAGANTGCGTATCCGTGATTCCTACATCACAGCGCTGAATGTTTGCCAAGCTT
GCACGNCTAAAGCGTATCAGGGACCCTGGCTTCCATGTAAGCCCCCGAGCTCACCTCTCCAAGGACATAATGGACTCAGG
GAAGCCAGCCGCTGAGCTTGTGAAGCTGAACACAACAAGCGAGTACGGCCCAGGCCTCGAGGACACTCTCATCCTGACCA
TGAAGGGCATCGCTGCTGGTATGCAGAACACTGGGTGAAGTAGAACTGGTTCGTTCTGATGGTGTGTTATGGTGTCATGA
ATTAGTGTAGTTTGCACCTCTATGCAATCACTATTTGCAGTTTGCACCTCTGAACTCTATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22285.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis