Browse Element(s) Details


Os.15356.1.S1_at

Description gb:AK071777.1
DB_XREF= gi:32981800
TID=Os.15356.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114K10, full insert sequence.
FL= gb:AK059301.1 gb:AK071777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5536011/11Phosphatidate cytidylyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55330NANA1+32173237..32173632hypothetical protein
LOC_Os01g55340Os.4186.1.S1_a_at11/111+32177389..32178465Dof domain, zinc finger family protein, expressed
LOC_Os01g55350Os.22285.1.S1_a_at11/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55350Os.45901.1.S1_x_at1/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55360Os.15356.1.S1_at11/111+32197783..32204455Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os01g55370Os.31586.1.S1_at11/111+32216559..32218069expressed protein
LOC_Os01g55370Os.31586.2.S1_x_at11/111+32216559..32218069expressed protein
LOC_Os01g55380OsAffx.23799.1.S1_at11/111+32219030..32219463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15356.1.S1_at--263--4871Chr01:32199156..32199180 (25 bp)
GCATACCTGGGCATGGTGGGATTAC
LOC_Os01g55360
Os.15356.1.S1_at--241--251Chr01:32198356..32198380 (25 bp)
ATATCACCAATCATTCATATCGCCC
LOC_Os01g55360
Os.15356.1.S1_at--587--151Chr01:32198340..32198364 (25 bp)
ATATCGCCCCAAAACTACTCTGTTG
LOC_Os01g55360
Os.15356.1.S1_at--276--2031Chr01:32198327..32198351 (25 bp)
ACTACTCTGTTGAGCTAATCTTGGA
LOC_Os01g55360
Os.15356.1.S1_at--748--5591Chr01:32198190..32198214 (25 bp)
GAAATTCTTATATCAGCAGCTTGGG
LOC_Os01g55360
Os.15356.1.S1_at--101--5891Chr01:32198087..32198111 (25 bp)
GAGCGCTCGGTTCCATGTATAGCAG
LOC_Os01g55360
Os.15356.1.S1_at--935--7231Chr01:32198032..32198056 (25 bp)
GTCCCTTTCCAAACCATTGTACAGA
LOC_Os01g55360
Os.15356.1.S1_at--458--10351Chr01:32197982..32198006 (25 bp)
TTTAGGTACTTGATTCGCTCTCCAC
LOC_Os01g55360
Os.15356.1.S1_at--765--6391Chr01:32197938..32197962 (25 bp)
GATCGGTTTATCCTTTTACGCTAAT
LOC_Os01g55360
Os.15356.1.S1_at--740--111Chr01:32197915..32197939 (25 bp)
ATTCTCATCATTTCTGCCCTTGTAA
LOC_Os01g55360
Os.15356.1.S1_at--124--9431Chr01:32197852..32197876 (25 bp)
TCGTGTGTTGGCCTCACATCAAATA
LOC_Os01g55360
Target Sequence 
GCATACCTGGGCATGGTGGGATTACTGACCGAATGGATTGTCAGATGGTTATGGCAGTTTTTGCATACATATATCACCAA
TCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGATTCTAAGAAATCTAACCTTTGAGGAGCAGAA
ATTCTTATATCAGCAGCTTGGGGAAATCTACCGTGAAAGGCAATTAATGCAGAGCTGAGAACTAGTTTGCTTATGATGAA
GCATACAGTATGTTGTTTTTGAGCGCTCGGTTCCATGTATAGCAGCATAGCTTNCTCTGTACGGCGATAGAGCAACGTCC
CTTTCCAAACCATTGTACAGAATAGAGTGTGGATGGGGTTTAGCGATTTAGGTACTTGATTCGCTCTCCACTTACGTTGC
CTTCTCTGGCGATCGGTTTATCCTTTTACGCTAATTCTCATCATTTCTGCCCTTGTAACNNNNNNAAGGGAACCGGAAAA
GGTTGTATTCGTGTATATCACTTCGTGTGTTGGCCTCACATCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis