Browse Element(s) Details


Os.31586.2.S1_x_at

Description gb:AK062409.1
DB_XREF= gi:32972427
TID=Os.31586.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.9 (B1131G08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-E11, full insert sequence.
FL= gb:AK062409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5537011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55350Os.22285.1.S1_a_at11/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55350Os.45901.1.S1_x_at1/111+32186181..32191879Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
LOC_Os01g55360Os.15356.1.S1_at11/111+32197783..32204455Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os01g55370Os.31586.1.S1_at11/111+32216559..32218069expressed protein
LOC_Os01g55370Os.31586.2.S1_x_at11/111+32216559..32218069expressed protein
LOC_Os01g55380OsAffx.23799.1.S1_at11/111+32219030..32219463hypothetical protein
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31586.2.S1_x_at--824--1911Chr01:32217726..32217750 (25 bp)
ACGTGGTGCGCATCGTGCACTCCAA
LOC_Os01g55370
Os.31586.2.S1_x_at--640--9211Chr01:32217706..32217730 (25 bp)
TCCAACGGCCGCGTGGAGGAGATCA
LOC_Os01g55370
Os.31586.2.S1_x_at--619--6431Chr01:32217659..32217683 (25 bp)
GATCATGAAGGCGTACCCCAAGCAC
LOC_Os01g55370
Os.31586.2.S1_x_at--373--1831Chr01:32217556..32217579 (24 bp)
ACGCCCAATGCCGAGCTGCAGAAGG
LOC_Os01g55370
Os.31586.2.S1_x_at--480--5051Chr01:32217539..32217563 (25 bp)
GCAGAAGGGCAAGATCTACTTCCTC
LOC_Os01g55370
Os.31586.2.S1_x_at--546--451Chr01:32217526..32217550 (25 bp)
ATCTACTTCCTCATGCCGGTGATGG
LOC_Os01g55370
Os.31586.2.S1_x_at--825--8311Chr01:32217321..32217345 (25 bp)
GGCTGCTGGCCAACGAGAGGTACCT
LOC_Os01g55370
Os.31586.2.S1_x_at--765--1331Chr01:32217306..32217330 (25 bp)
AGAGGTACCTGTCGGAGATCATGAA
LOC_Os01g55370
Os.31586.2.S1_x_at--1157--8651Chr01:32217234..32217258 (25 bp)
TGTGGCGACCTCACCTGGAGAGCAT
LOC_Os01g55370
Os.31586.2.S1_x_at--281--9671Chr01:32217210..32217234 (25 bp)
TCACCGAGGATGACTTGTAATCAAA
LOC_Os01g55370
Os.31586.2.S1_x_at--429--1211Chr01:32217119..32217143 (25 bp)
AGTTTCTTTTGCCAATTCCTTCTGT
LOC_Os01g55370
Target Sequence 
ACGTGGTGCGCATCGTGCACTCCAACGGCCGCGTGGAGGAGATCAGCCGGCCGGTGCTCGCCGGCGAGATCATGAAGGCG
TACCCCAAGCACGCCCAATGCCGAGCTGCAGAAGGGCAAGATCTACTTCCTCATGCCGGTGATGGCCCCACCGGAGAAGG
AGAAGGAGAAGGAGAAGGCGAAGGCGGCCCAAGCGCAGGCGCCCGCGGCGGCGAGGAGGCGGCGGAGGAGGAAAGAAACC
GCTGATGAGGCCGCCGGCGGCCGAGCTGCCAGCAACGCAGCGGCCGCGCCGCCCACCCGCGTCGGCTCGGAGGGCGAGAA
GGAGCGGCTGCTGGCCAACGAGAGGTACCTGTCGGAGATCATGAAGGAGAAGGCGTCGACGGCGAGAGACCGGCGGCGCG
GGCGCGTCGCCGTGTGGCGACCTCACCTGGAGAGCATCACCGAGGATGACTTGTAATCAAACGAGGTGTTCGTTTTTTTT
TCTTCTTCTTCTCTATTTTTTCCCATTGGGTTCTTGTTTTTTTACTTAGTTTCTTTTGCCAATTCCTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31586.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis