Browse Element(s) Details


Os.54725.1.S1_at

Description gb:AK106605.1
DB_XREF= gi:32991814
TID=Os.54725.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E03, full insert sequence.
FL= gb:AK106605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5539010/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55370Os.31586.1.S1_at11/111+32216559..32218069expressed protein
LOC_Os01g55370Os.31586.2.S1_x_at11/111+32216559..32218069expressed protein
LOC_Os01g55380OsAffx.23799.1.S1_at11/111+32219030..32219463hypothetical protein
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54725.1.S1_at--742--5211Chr01:32237899..32237923 (25 bp)
GAATTCTTGTTCTATCTGTCAGCAA
LOC_Os01g55390
Os.54725.1.S1_at--174--5491Chr01:32237978..32238002 (25 bp)
GAACATGCCTGGTTCTGGCCAAAGT
LOC_Os01g55390
Os.54725.1.S1_at--746--10271Chr01:32238027..32238051 (25 bp)
TTTGCCGGCCACTAGTCTGATTCAT
LOC_Os01g55390
Os.54725.1.S1_at--721--7351Chr01:32238095..32238119 (25 bp)
GTGAATCACTGTATCCTTCTTTGCC
LOC_Os01g55390
Os.54725.1.S1_at--522--1071Chr01:32238133..32238157 (25 bp)
AGGGATGATCCTCATGTTGTCACAT
LOC_Os01g55390
Os.54725.1.S1_at--712--3011Chr01:32238163..32238187 (25 bp)
AATGCTCAAGAGCTGCGTCTTCGTT
LOC_Os01g55390
Os.54725.1.S1_at--1088--752Chr01:32238236..32238260 (25 bp)
ATGTCACGGCGGCAAGTTCTCTGAA
LOC_Os01g55390
Os.54725.1.S1_at--551--132Chr01:32238266..32238290 (25 bp)
ATTCAAATCAAACTGCAGCGGCCCA
LOC_Os01g55390
Os.54725.1.S1_at--807--1672Chr01:32238290..32238314 (25 bp)
AGCCTGTTAGGCGATCCAAGCGTGA
LOC_Os01g55390
Os.54725.1.S1_at--663--4172Chr01:32238322..32238346 (25 bp)
CCCAGTATCCGTTTTCCTAAGAGTG
LOC_Os01g55390
Os.54725.1.S1_at--28--3072Chr01:32238466..32238490 (25 bp)
AATCTAATTCCAATCTCTCTGCTTG
NONE
Target Sequence 
GAATTCTTGTTCTATCTGTCAGCAAGCAAAGTCAGAACATGTCAAATACCCTGGAATGTTACAACCATTACCTGTTCCAG
AACATGCCTGGTTCTGGCCAAAGTTGGAGAAGTGGCTTATAAATTGGCTTTGCCGGCCACTAGTCTGATTCATCCTGTCA
TCCATGTTTCCCAACTCAAGAAAGCTTTGGCGCCCAGTGAATCACTGTATCCTTCTTTGCCCAGGATTCAGTCAAGGGAT
GATCCTCATGTTGTCACATGGGAGAATGCTCAAGAGCTGCGTCTTCGTTTTCCTCAATCTGAAGCTTGGGGACAAGCTTC
ATCTCAAGGTGGAGGGAATGTCACGGCGGCAAGTTCTCTGAAGCTGGATTCAAATCAAACTGCAGCGGCCCAGCCTGTTA
GGCGATCCAAGCGTGAGGCACAACCCAGTATCCGTTTTCCTAAGAGTGTGTGGACCCAGTAGATAGAGGCTGGGCCACTG
TCAGGGAGAGAGGCTTGTTAGTGCATTACTATATAAGCCGGCAGGTTAGAGAGAAAAGGGGATCGAATCATGTAAACAAT
ACAATTCAATCTAATTCCAATCTCTCTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis