Browse Element(s) Details


Os.31726.1.S1_at

Description gb:AK106853.1
DB_XREF= gi:32992062
TID=Os.31726.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Tub family protein (B1131G08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B03, full insert sequence.
FL= gb:AK106853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5543011/11Tub family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31726.1.S1_at--478--8991Chr01:32254478..32254502 (25 bp)
TGAATAGGTAGCTCCATGCACTTAT
LOC_Os01g55430
Os.31726.1.S1_at--21--8891Chr01:32254373..32254397 (25 bp)
TGAGGCTAACATCCTACATTACAGT
LOC_Os01g55430
Os.31726.1.S1_at--920--2071Chr01:32254358..32254382 (25 bp)
ACATTACAGTCTTTGTTGCCCATTC
LOC_Os01g55430
Os.31726.1.S1_at--233--10711Chr01:32254343..32254367 (25 bp)
TTGCCCATTCTGACCATTTTGTTCT
LOC_Os01g55430
Os.31726.1.S1_at--279--171Chr01:32254328..32254352 (25 bp)
ATTTTGTTCTCGTCTCTAGCCATGT
LOC_Os01g55430
Os.31726.1.S1_at--866--9331Chr01:32254312..32254336 (25 bp)
TAGCCATGTCGTCTAACAACTCCGA
LOC_Os01g55430
Os.31726.1.S1_at--672--7871Chr01:32254266..32254290 (25 bp)
GGTTACGGGAGTTCATCAGCACTTT
LOC_Os01g55430
Os.31726.1.S1_at--94--1491Chr01:32254249..32254273 (25 bp)
AGCACTTTGGAGCTAATGCGGTCAA
LOC_Os01g55430
Os.31726.1.S1_at--238--6151Chr01:32254122..32254146 (25 bp)
GAGGTGTTGCCGTATCATGTCATAA
LOC_Os01g55430
Os.31726.1.S1_at--603--10831Chr01:32254090..32254114 (25 bp)
TTGTGCTTGTGTGTTTGGGATCCTA
LOC_Os01g55430
Os.31726.1.S1_at--574--9051Chr01:32254022..32254046 (25 bp)
TGCAGTCCTCAGTGTAGTCATGTAT
LOC_Os01g55430
Target Sequence 
TGAATAGGTAGCTCCATGCACTTATTATTGTTGTAGTATGATTTTATTGTTTTCGTTACCAGTAACAGAATTTATTTATA
ATACTGGCTAGGAGGATGTCTAAAATGAGGCTAACATCCTACATTACAGTCTTTGTTGCCCATTCTGACCATTTTGTTCT
CGTCTCTAGCCATGTCGTCTAACAACTCCGACAAGAGATATAGCTTGTGCATGGTTACGGGAGTTCATCAGCACTTTGGA
GCTAATGCGGTCAAGATCGTTGATGTGCTGAAAAGAATAGTTTGAGTAGTCCAGAGTGAAAAGATGGGATAAAGGGTTTT
CAAAGTGAAACAGGCCGAAAGTGTAATTCTATATGTGAGGTGTTGCCGTATCATGTCATAATGCAACGTTGTGCTTGTGT
GTTTGGGATCCTATTAAATCTGTATATGTATCCAGGATGAGGAAGACTTGTAAATCTGCAGTCCTCAGTGTAGTCATGTA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis